Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7995787.1 | |
| CAI7995791.1 | SODIUM ION/PROTON ANTIPORTER NHAA-RELATED |
| CAI7995789.1 | SODIUM ION/PROTON ANTIPORTER NHAA-RELATED |
| CAI7995793.1 | SODIUM ION/PROTON ANTIPORTER NHAA-RELATED |
| CAI7995795.1 | UNCHARACTERIZED |
| CAI7995797.1 | |
| CAI7995799.1 | |
| CAI7995801.1 | ELONGATION FACTOR TU-RELATED |
| CAI7995803.1 | ELONGATION FACTOR TU-RELATED |
| CAI7995805.1 | ELONGATION FACTOR TU-RELATED |
| CAI7995807.1 | ELONGATION FACTOR TU-RELATED |
| CAI7995809.1 | RHO-INTERACTING TRANSCRIPTION TERMINATION FACTOR NUSG |
| CAI7995811.1 | 60S RIBOSOMAL PROTEIN L12 |
| CAI7995813.1 | 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL |
| CAI7995815.1 | 39S RIBOSOMAL PROTEIN L12 |
| CAI7995817.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI7995819.1 | BLR8190 PROTEIN |
| CAI7995821.1 | GLR0591 PROTEIN |
| CAI7995823.1 | SULFOQUINOVOSYL TRANSFERASE SQD2 |
| CAI7995825.1 | |
| CAI7995831.1 | GTP CYCLOHYDROLASE I |
| CAI7995829.1 | GTP CYCLOHYDROLASE I |
| CAI7995827.1 | GTP CYCLOHYDROLASE I |
| CAI7995833.1 | |
| CAI7995837.1 | CYSTATHIONINE BETA-SYNTHASE |
| CAI7995835.1 | CYSTATHIONINE BETA-SYNTHASE |
| CAI7995839.1 | HOMOSERINE DEHYDROGENASE |
| CAI7995841.1 | |
| CAI7995850.1 | |
| CAI7995848.1 | |
| CAI7995846.1 | |
| CAI7995852.1 | |
| CAI7995854.1 | |
| CAI7995856.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI7995858.1 | |
| CAI7995860.1 | PROTEIN SIDEKICK |
| CAI7995862.1 | PROTEIN SIDEKICK |
| CAI7995882.1 | MONOFUNCTIONAL BIOSYNTHETIC PEPTIDOGLYCAN TRANSGLYCOSYLASE |
| CAI7995884.1 | MONOFUNCTIONAL BIOSYNTHETIC PEPTIDOGLYCAN TRANSGLYCOSYLASE |
| CAI7995886.1 | |
| CAI7995888.1 | GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 |
| CAI7995890.1 | ALPHA-L-FUCOSIDASE |
| CAI7995892.1 | |
| CAI7995894.1 | GLE-1-RELATED |
| CAI7995896.1 | GLE-1-RELATED |
| CAI7995898.1 | GLE-1-RELATED |
| CAI7995900.1 | |
| CAI7995904.1 | |
| CAI7995902.1 | |
| CAI7995910.1 | DNA-DIRECTED RNA POLYMERASE III |
