Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7995053.1 | MEMBRANE-ASSOCIATED PROTEIN VIPP1, CHLOROPLASTIC |
| CAI7995055.1 | TMRNA-BINDING COMPONENT OF TRANS-TRANSLATION TAGGING COMPLEX |
| CAI7995057.1 | D-MALATE DEHYDROGENASE [DECARBOXYLATING] |
| CAI7995059.1 | D-MALATE DEHYDROGENASE [DECARBOXYLATING] |
| CAI7995061.1 | HYDROPEROXIDASE I, BIFUNCTIONAL CATALASE-PEROXIDASE |
| CAI7995063.1 | HYDROPEROXIDASE I, BIFUNCTIONAL CATALASE-PEROXIDASE |
| CAI7995073.1 | WD40 REPEAT PROTEIN |
| CAI7995071.1 | WD40 REPEAT PF20 |
| CAI7995069.1 | WD40 REPEAT PROTEIN |
| CAI7995067.1 | WD40 REPEAT PROTEIN |
| CAI7995065.1 | WD40 REPEAT PROTEIN |
| CAI7995075.1 | WD REPEAT-CONTAINING PROTEIN POP1 |
| CAI7995077.1 | |
| CAI7995079.1 | |
| CAI7995081.1 | MEMBRANE COMPONENT OF TRANSPORTER-RELATED |
| CAI7995083.1 | |
| CAI7995085.1 | |
| CAI7995087.1 | |
| CAI7995089.1 | IMPORT ATP-BINDING PROTEIN |
| CAI7995091.1 | ALCOHOL DEHYDROGENASE |
| CAI7995093.1 | |
| CAI7995095.1 | RECA |
| CAI7995097.1 | 5-OXOPROLINASE RELATED |
| CAI7995099.1 | 5-OXOPROLINASE RELATED |
| CAI7995101.1 | PYRUVOYL TETRAHYDROBIOPTERIN SYNTHASE |
| CAI7995103.1 | GTP CYCLOHYDROLASE I |
| CAI7995105.1 | GTP CYCLOHYDROLASE I |
| CAI7995107.1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7B |
| CAI7995109.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI7995111.1 | 2-KETO-3-DEOXY-6-PHOSPHOGLUCONATE ALDOLASE |
| CAI7995113.1 | 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE |
| CAI7995115.1 | WD REPEAT-CONTAINING PROTEIN POP1 |
| CAI7995117.1 | WD40 REPEAT PROTEIN |
| CAI7995119.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI7995121.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI7995123.1 | SHIKIMATE DEHYDROGENASE |
| CAI7995125.1 | SHIKIMATE DEHYDROGENASE |
| CAI7995127.1 | SHIKIMATE DEHYDROGENASE |
| CAI7995131.1 | RIBONUCLEASE VAPC2 |
| CAI7995133.1 | |
| CAI7995135.1 | |
| CAI7995137.1 | SLR1095 PROTEIN |
| CAI7995139.1 | |
| CAI7995143.1 | - |
| CAI7995141.1 | |
| CAI7995156.1 | |
| CAI7995158.1 | |
| CAI7995162.1 | 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE |
| CAI7995160.1 | 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE |
| CAI7995164.1 | 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE |
