Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7994929.1 | ALPHA-MANNOSIDASE 2C1 |
| CAI7994935.1 | UNCHARACTERIZED |
| CAI7994933.1 | UNCHARACTERIZED |
| CAI7994946.1 | |
| CAI7994948.1 | |
| CAI7994950.1 | |
| CAI7994952.1 | TYROSINE-PROTEIN KINASE |
| CAI7994954.1 | |
| CAI7994956.1 | |
| CAI7994958.1 | |
| CAI7994960.1 | |
| CAI7994962.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI7994964.1 | |
| CAI7994966.1 | |
| CAI7994968.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7994970.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7994972.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7994974.1 | |
| CAI7994976.1 | - |
| CAI7994990.1 | SHIPPO-1-RELATED |
| CAI7994992.1 | SHIPPO-1-RELATED |
| CAI7994988.1 | PROTEIN STPG4 |
| CAI7994986.1 | SHIPPO-1-RELATED |
| CAI7994984.1 | SHIPPO-1-RELATED |
| CAI7994982.1 | |
| CAI7994980.1 | SHIPPO-1-RELATED |
| CAI7994978.1 | |
| CAI7994996.1 | SHIPPO-1-RELATED |
| CAI7994994.1 | |
| CAI7995002.1 | SHIPPO-1-RELATED |
| CAI7995000.1 | |
| CAI7994998.1 | |
| CAI7995004.1 | |
| CAI7995006.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI7995021.1 | SUCCINYL-COA LIGASE SUBUNIT ALPHA |
| CAI7995023.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI7995025.1 | |
| CAI7995027.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI7995029.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI7995031.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI7995033.1 | PROTEIN TONB-RELATED |
| CAI7995035.1 | PEPTIDASE S45 PENICILLIN AMIDASE |
| CAI7995037.1 | PEPTIDASE S45 PENICILLIN AMIDASE |
| CAI7995039.1 | |
| CAI7995041.1 | N-ACETYLNEURAMINATE LYASE |
| CAI7995043.1 | |
| CAI7995045.1 | |
| CAI7995047.1 | MEMBRANE-ASSOCIATED PROTEIN VIPP1, CHLOROPLASTIC |
| CAI7995049.1 | VON HIPPEL-LINDAU PROTEIN |
| CAI7995051.1 | FLOTILLIN-RELATED |
