Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7994579.1 | ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED |
| CAI7994580.1 | TRNA METHYLTRANSFERASE |
| CAI7994582.1 | |
| CAI7994581.1 | |
| CAI7994583.1 | |
| CAI7994584.1 | |
| CAI7994585.1 | |
| CAI7994597.1 | - |
| CAI7994595.1 | |
| CAI7994599.1 | PROTEIN DISULFIDE ISOMERASE |
| CAI7994601.1 | |
| CAI7994603.1 | |
| CAI7994607.1 | BARDET-BIEDL SYNDROME 1 PROTEIN |
| CAI7994605.1 | BARDET-BIEDL SYNDROME 1 PROTEIN |
| CAI7994609.1 | ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 1 |
| CAI7994615.1 | KETIMINE REDUCTASE MU-CRYSTALLIN |
| CAI7994613.1 | KETIMINE REDUCTASE MU-CRYSTALLIN |
| CAI7994611.1 | KETIMINE REDUCTASE MU-CRYSTALLIN |
| CAI7994617.1 | SJOEGREN SYNDROME NUCLEAR AUTOANTIGEN 1 |
| CAI7994621.1 | |
| CAI7994619.1 | CENTROMERE PROTEIN E |
| CAI7994623.1 | |
| CAI7994625.1 | |
| CAI7994627.1 | |
| CAI7994629.1 | |
| CAI7994631.1 | |
| CAI7994633.1 | |
| CAI7994635.1 | |
| CAI7994639.1 | |
| CAI7994637.1 | |
| CAI7994641.1 | |
| CAI7994643.1 | |
| CAI7994645.1 | FRIZZLED |
| CAI7994652.1 | FASTING-INDUCIBLE INTEGRAL MEMBRANE PROTEIN TM6P1-RELATED |
| CAI7994650.1 | FASTING-INDUCIBLE INTEGRAL MEMBRANE PROTEIN TM6P1-RELATED |
| CAI7994660.1 | PROTEIN PITCHFORK |
| CAI7994664.1 | PROTEIN PITCHFORK |
| CAI7994662.1 | PROTEIN PITCHFORK |
| CAI7994658.1 | PROTEIN PITCHFORK |
| CAI7994654.1 | PROTEIN PITCHFORK |
| CAI7994656.1 | PROTEIN PITCHFORK |
| CAI7994666.1 | |
| CAI7994668.1 | |
| CAI7994670.1 | |
| CAI7994672.1 | UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI7994674.1 | UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI7994676.1 | |
| CAI7994682.1 | |
| CAI7994680.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| CAI7994688.1 |
