Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7994429.1 | |
| CAI7994432.1 | ACYL-COA DEHYDROGENASE |
| CAI7994431.1 | ACYL-COA DEHYDROGENASE |
| CAI7994430.1 | ACYL-COA DEHYDROGENASE |
| CAI7994433.1 | ACYL-COA DEHYDROGENASE |
| CAI7994434.1 | ACYL-COA DEHYDROGENASE |
| CAI7994435.1 | |
| CAI7994441.1 | NME/NM23 FAMILY MEMBER 8 |
| CAI7994440.1 | NUCLEOSIDE DIPHOSPHATE KINASE |
| CAI7994439.1 | NUCLEOSIDE DIPHOSPHATE KINASE |
| CAI7994438.1 | NUCLEOSIDE DIPHOSPHATE KINASE |
| CAI7994437.1 | |
| CAI7994436.1 | |
| CAI7994442.1 | NME/NM23 FAMILY MEMBER 8 |
| CAI7994443.1 | SERINE/THREONINE-PROTEIN KINASE TAO |
| CAI7994452.1 | OUTER SEGMENT 5 |
| CAI7994451.1 | OUTER SEGMENT 5 |
| CAI7994450.1 | OUTER SEGMENT 5 |
| CAI7994449.1 | OUTER SEGMENT 5 |
| CAI7994448.1 | OUTER SEGMENT 5 |
| CAI7994447.1 | OUTER SEGMENT 5 |
| CAI7994446.1 | OUTER SEGMENT 5 |
| CAI7994444.1 | OUTER SEGMENT 5 |
| CAI7994445.1 | OUTER SEGMENT 5 |
| CAI7994453.1 | OUTER SEGMENT 5 |
| CAI7994454.1 | OUTER SEGMENT 5 |
| CAI7994455.1 | OUTER SEGMENT 5 |
| CAI7994456.1 | OUTER SEGMENT 5 |
| CAI7994459.1 | MUSCLEBLIND-LIKE PROTEIN |
| CAI7994458.1 | MUSCLEBLIND-LIKE PROTEIN |
| CAI7994457.1 | MUSCLEBLIND-LIKE PROTEIN |
| CAI7994460.1 | |
| CAI7994464.1 | E3 UBIQUITIN-PROTEIN LIGASE TRIP12 |
| CAI7994463.1 | E3 UBIQUITIN-PROTEIN LIGASE TRIP12 |
| CAI7994462.1 | E3 UBIQUITIN-PROTEIN LIGASE TRIP12 |
| CAI7994461.1 | E3 UBIQUITIN-PROTEIN LIGASE TRIP12 |
| CAI7994465.1 | E3 UBIQUITIN-PROTEIN LIGASE TRIP12 |
| CAI7994466.1 | E3 UBIQUITIN-PROTEIN LIGASE TRIP12 |
| CAI7994467.1 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED |
| CAI7994468.1 | |
| CAI7994469.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4 |
| CAI7994474.1 | HISTONE DEACETYLASE COMPLEX SUBUNIT SAP130 |
| CAI7994473.1 | |
| CAI7994472.1 | |
| CAI7994471.1 | |
| CAI7994470.1 | |
| CAI7994475.1 | HISTONE DEACETYLASE COMPLEX SUBUNIT SAP130 |
| CAI7994476.1 | HISTONE DEACETYLASE COMPLEX SUBUNIT SAP130 |
| CAI7994477.1 | HISTONE DEACETYLASE COMPLEX SUBUNIT SAP130 |
| CAI7994478.1 | CARBOXYLIC ESTER HYDROLASE |
