Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7994523.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI7994533.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI7994532.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI7994530.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI7994531.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI7994534.1 | TWO-COMPONENT HISTIDINE PROTEIN KINASE |
| CAI7994535.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI7994536.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI7994537.1 | ABC TRANSPORTER I FAMILY MEMBER 17 |
| CAI7994538.1 | PHOSPHATE-SPECIFIC TRANSPORT SYSTEM ACCESSORY PROTEIN PHOU |
| CAI7994539.1 | REGULATOR OF RPOS |
| CAI7994540.1 | REGULATOR OF RPOS |
| CAI7994541.1 | REGULATOR OF RPOS |
| CAI7994542.1 | RECOMBINATION PROTEIN RECR |
| CAI7994545.1 | NUCLEOID-ASSOCIATED PROTEIN YBAB |
| CAI7994544.1 | NUCLEOID-ASSOCIATED PROTEIN YBAB |
| CAI7994543.1 | NUCLEOID-ASSOCIATED PROTEIN YBAB |
| CAI7994546.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| CAI7994547.1 | ELECTRON TRANSFER FLAVOPROTEIN BETA SUBUNIT LYSINE METHYLTRANSFERASE |
| CAI7994548.1 | XAA-PRO AMINOPEPTIDASE 1 |
| CAI7994549.1 | ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE |
| CAI7994550.1 | ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE |
| CAI7994551.1 | |
| CAI7994552.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI7994553.1 | FLAVIN-DEPENDENT THYMIDYLATE SYNTHASE |
| CAI7994554.1 | FLAVIN-DEPENDENT THYMIDYLATE SYNTHASE |
| CAI7994557.1 | FLAVIN-DEPENDENT THYMIDYLATE SYNTHASE |
| CAI7994555.1 | FLAVIN-DEPENDENT THYMIDYLATE SYNTHASE |
| CAI7994556.1 | FLAVIN-DEPENDENT THYMIDYLATE SYNTHASE |
| CAI7994560.1 | IRON-SULFUR PROTEIN NUBPL |
| CAI7994559.1 | IRON-SULFUR PROTEIN NUBPL |
| CAI7994558.1 | IRON-SULFUR PROTEIN NUBPL |
| CAI7994561.1 | STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL |
| CAI7994562.1 | MODULATOR OF FTSH PROTEASE HFLC |
| CAI7994563.1 | LMO2823 PROTEIN |
| CAI7994564.1 | TRNA DIMETHYLALLYLTRANSFERASE |
| CAI7994565.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI7994566.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI7994567.1 | |
| CAI7994568.1 | EPOXIDE HYDROLASE |
| CAI7994569.1 | |
| CAI7994570.1 | |
| CAI7994571.1 | |
| CAI7994572.1 | |
| CAI7994573.1 | |
| CAI7994574.1 | HISTONE ACETYLTRANSFERASE-RELATED |
| CAI7994575.1 | HISTONE ACETYLTRANSFERASE-RELATED |
| CAI7994576.1 | |
| CAI7994577.1 | |
| CAI7994578.1 | TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS |
