Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7994129.1 | RIBULOSE-5-PHOSPHATE-3-EPIMERASE |
| CAI7994131.1 | CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED |
| CAI7994133.1 | PHOSPHOMANNOMUTASE |
| CAI7994135.1 | PHOSPHOMANNOMUTASE |
| CAI7994137.1 | ALANINE DEHYDROGENASE |
| CAI7994139.1 | DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED |
| CAI7994141.1 | ALANYL-TRNA SYNTHETASE |
| CAI7994143.1 | NITRILASE C965.09-RELATED |
| CAI7994147.1 | TRANSAMIDASE |
| CAI7994145.1 | TRANSAMIDASE |
| CAI7994149.1 | |
| CAI7994153.1 | 39S RIBOSOMAL PROTEIN L20 |
| CAI7994151.1 | 39S RIBOSOMAL PROTEIN L20 |
| CAI7994155.1 | 54S RIBOSOMAL PROTEIN BL35M |
| CAI7994165.1 | TRANSLATION INITIATION FACTOR IF-3 |
| CAI7994163.1 | TRANSLATION INITIATION FACTOR IF-3 |
| CAI7994161.1 | TRANSLATION INITIATION FACTOR IF-3 |
| CAI7994159.1 | TRANSLATION INITIATION FACTOR IF-3 |
| CAI7994157.1 | TRANSLATION INITIATION FACTOR IF-3 |
| CAI7994181.1 | THREONINE-TRNA LIGASE |
| CAI7994179.1 | THREONINE-TRNA LIGASE |
| CAI7994177.1 | THREONINE-TRNA LIGASE |
| CAI7994175.1 | THREONINE-TRNA LIGASE |
| CAI7994173.1 | THREONINE-TRNA LIGASE |
| CAI7994171.1 | THREONINE-TRNA LIGASE |
| CAI7994169.1 | THREONINE-TRNA LIGASE |
| CAI7994167.1 | THREONINE-TRNA LIGASE |
| CAI7994185.1 | TYPE II SECRETION SYSTEM PROTEIN GSPE-RELATED |
| CAI7994183.1 | TYPE II SECRETION SYSTEM PROTEIN GSPE-RELATED |
| CAI7994187.1 | SERINE PROTEASE FAMILY S1C HTRA-RELATED |
| CAI7994191.1 | INOSITOL MONOPHOSPHATASE |
| CAI7994189.1 | INOSITOL MONOPHOSPHATASE |
| CAI7994193.1 | |
| CAI7994195.1 | CELL CYCLE PROTEIN |
| CAI7994199.1 | CELL SHAPE-DETERMINING PROTEIN MREB |
| CAI7994197.1 | CELL SHAPE-DETERMINING PROTEIN MREB |
| CAI7994201.1 | MOLYBDOPTERIN BIOSYNTHESIS PROTEIN |
| CAI7994203.1 | SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA |
| CAI7994205.1 | TRNA THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN TSAE |
| CAI7994208.1 | |
| CAI7994211.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7994213.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI7994215.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI7994240.1 | WD40 REPEAT PROTEIN 12, 37 |
| CAI7994238.1 | WD40 REPEAT PROTEIN 12, 37 |
| CAI7994236.1 | WD40 REPEAT PROTEIN |
| CAI7994242.1 | GLYCOSYLTRANSFERASE 14 FAMILY MEMBER |
| CAI7994244.1 | BETA-GALACTOSIDASE RELATED |
| CAI7994246.1 | |
| CAI7994248.1 |
