Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7993816.1 | PRE-MRNA SPLICING FACTOR |
| CAI7993820.1 | PRE-MRNA SPLICING FACTOR |
| CAI7993817.1 | PRE-MRNA SPLICING FACTOR |
| CAI7993821.1 | PRE-MRNA SPLICING FACTOR |
| CAI7993822.1 | AP-5 COMPLEX SUBUNIT SIGMA-1 |
| CAI7993823.1 | ADENOSINE DEAMINASE |
| CAI7993826.1 | 80 KDA MCM3-ASSOCIATED PROTEIN |
| CAI7993825.1 | 80 KDA MCM3-ASSOCIATED PROTEIN |
| CAI7993824.1 | |
| CAI7993827.1 | 80 KDA MCM3-ASSOCIATED PROTEIN |
| CAI7993828.1 | GLUTATHIONE S-TRANSFERASE KAPPA |
| CAI7993829.1 | SPONDIN |
| CAI7993830.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI7993831.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI7993832.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI7993833.1 | RIDDLE |
| CAI7993834.1 | RIDDLE |
| CAI7993835.1 | RIDDLE |
| CAI7993836.1 | |
| CAI7993837.1 | |
| CAI7993843.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI7993842.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI7993840.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI7993841.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI7993839.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI7993838.1 | |
| CAI7993844.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI7993845.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI7993846.1 | |
| CAI7993847.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI7993850.1 | SYNAPTIC VESICLE GLYCOPROTEIN 2 |
| CAI7993849.1 | SOLUTE CARRIER FAMILY 22 MEMBER |
| CAI7993848.1 | SOLUTE CARRIER FAMILY 22 MEMBER |
| CAI7993853.1 | SOLUTE CARRIER FAMILY 22 MEMBER |
| CAI7993852.1 | SYNAPTIC VESICLE GLYCOPROTEIN 2 |
| CAI7993851.1 | |
| CAI7993854.1 | SYNAPTIC VESICLE GLYCOPROTEIN 2 |
| CAI7993856.1 | |
| CAI7993857.1 | |
| CAI7993858.1 | |
| CAI7993855.1 | |
| CAI7993859.1 | RRNA PROCESSING PROTEIN EBNA1-BINDING PROTEIN-RELATED |
| CAI7993860.1 | PROTEIN FAM183B |
| CAI7993861.1 | INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER |
| CAI7993863.1 | INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER |
| CAI7993873.1 | HISTONE H3 METHYLTRANSFERASE |
| CAI7993871.1 | HISTONE H3 METHYLTRANSFERASE |
| CAI7993869.1 | HISTONE H3 METHYLTRANSFERASE |
| CAI7993867.1 | HISTONE H3 METHYLTRANSFERASE |
| CAI7993865.1 | HISTONE H3 METHYLTRANSFERASE |
