Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7993879.1 | HISTONE H3 METHYLTRANSFERASE |
| CAI7993877.1 | HISTONE H3 METHYLTRANSFERASE |
| CAI7993875.1 | HISTONE H3 METHYLTRANSFERASE |
| CAI7993881.1 | HISTONE H3 METHYLTRANSFERASE |
| CAI7993883.1 | HISTONE H3 METHYLTRANSFERASE |
| CAI7993885.1 | |
| CAI7993887.1 | |
| CAI7993892.1 | |
| CAI7993894.1 | AARF DOMAIN CONTAINING KINASE 2 (PREDICTED) |
| CAI7993896.1 | AARF DOMAIN CONTAINING KINASE 2 (PREDICTED) |
| CAI7993900.1 | NACHT DOMAIN-CONTAINING PROTEIN |
| CAI7993898.1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
| CAI7993902.1 | LEUCYL-TRNA SYNTHETASE |
| CAI7993904.1 | GABA-B RECEPTOR |
| CAI7993909.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI7993915.1 | MYOTROPHIN |
| CAI7993917.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI7993919.1 | CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED |
| CAI7993913.1 | MASK PROTEIN |
| CAI7993911.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI7993921.1 | |
| CAI7993959.1 | |
| CAI7993961.1 | PHOSPHATIDYLINOSITOL KINASE |
| CAI7993963.1 | PHOSPHATIDYLINOSITOL KINASE |
| CAI7993967.1 | ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE |
| CAI7993971.1 | ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE |
| CAI7993965.1 | ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE |
| CAI7993969.1 | ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE |
| CAI7993973.1 | |
| CAI7993975.1 | DIVALENT CATION TRANSPORTER SOLUTE CARRIER FAMILY 41 |
| CAI7993977.1 | DIVALENT CATION TRANSPORTER SOLUTE CARRIER FAMILY 41 |
| CAI7993979.1 | |
| CAI7993985.1 | TRANSKETOLASE |
| CAI7993983.1 | TRANSKETOLASE |
| CAI7993981.1 | TRANSKETOLASE |
| CAI7993987.1 | TRANSKETOLASE |
| CAI7993989.1 | TRANSKETOLASE |
| CAI7993991.1 | TRANSKETOLASE |
| CAI7993993.1 | RAB FAMILY |
| CAI7993995.1 | RAB FAMILY |
| CAI7993997.1 | OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATED |
| CAI7993999.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| CAI7994005.1 | SWI/SNF-RELATED |
| CAI7994001.1 | SWI/SNF-RELATED |
| CAI7994003.1 | SWI/SNF-RELATED |
| CAI7994007.1 | |
| CAI7994009.1 | SWI/SNF-RELATED |
| CAI7994011.1 | SWI/SNF-RELATED |
| CAI7994013.1 | SWI/SNF-RELATED |
| CAI7994021.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 54 |
