Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7993587.1 | CADHERIN-23 |
| CAI7993593.1 | TRANSCRIPTION FACTOR AP-2 |
| CAI7993591.1 | TRANSCRIPTION FACTOR AP-2 |
| CAI7993589.1 | CADHERIN-87A |
| CAI7993595.1 | TRANSCRIPTION FACTOR AP-2 |
| CAI7993597.1 | |
| CAI7993599.1 | CYTOKINE RECEPTOR |
| CAI7993601.1 | CYTOKINE RECEPTOR |
| CAI7993603.1 | |
| CAI7993605.1 | |
| CAI7993611.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI7993615.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI7993613.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI7993625.1 | |
| CAI7993633.1 | SNF2/RAD54 HELICASE FAMILY |
| CAI7993631.1 | SNF2/RAD54 HELICASE FAMILY |
| CAI7993629.1 | SNF2/RAD54 HELICASE FAMILY |
| CAI7993627.1 | SNF2/RAD54 HELICASE FAMILY |
| CAI7993635.1 | SNF2/RAD54 HELICASE FAMILY |
| CAI7993637.1 | SNF2/RAD54 HELICASE FAMILY |
| CAI7993639.1 | SNF2/RAD54 HELICASE FAMILY |
| CAI7993641.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| CAI7993643.1 | |
| CAI7993645.1 | RUNT RELATED |
| CAI7993647.1 | |
| CAI7993649.1 | |
| CAI7993659.1 | UBIQUITIN FUSION DEGRADATON PROTEIN 1 |
| CAI7993661.1 | |
| CAI7993663.1 | |
| CAI7993665.1 | TRANSAMINASE |
| CAI7993667.1 | |
| CAI7993669.1 | |
| CAI7993673.1 | AGAP010540-PA |
| CAI7993671.1 | PRE-MRNA-PROCESSING PROTEIN PRP40 |
| CAI7993675.1 | |
| CAI7993681.1 | CHAPERONIN |
| CAI7993679.1 | CHAPERONIN |
| CAI7993677.1 | CHAPERONIN |
| CAI7993683.1 | CHAPERONIN |
| CAI7993685.1 | CHAPERONIN |
| CAI7993687.1 | |
| CAI7993689.1 | |
| CAI7993691.1 | |
| CAI7993693.1 | |
| CAI7993695.1 | |
| CAI7993697.1 | |
| CAI7993699.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 105 |
| CAI7993701.1 | - |
| CAI7993704.1 | SSL7038 PROTEIN |
| CAI7993706.1 | SSL7039 PROTEIN |
