Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7993049.1 | NITRIC OXIDE SYNTHASE-RELATED |
| CAI7993041.1 | NITRIC OXIDE SYNTHASE-RELATED |
| CAI7993051.1 | |
| CAI7993053.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN L41 |
| CAI7993057.1 | SEPTIN |
| CAI7993061.1 | SEPTIN |
| CAI7993059.1 | SEPTIN |
| CAI7993055.1 | |
| CAI7993063.1 | SEPTIN |
| CAI7993069.1 | LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN |
| CAI7993067.1 | |
| CAI7993065.1 | |
| CAI7993071.1 | LUNG CANCER METASTASIS-RELATED LCMR1 PROTEIN |
| CAI7993073.1 | |
| CAI7993075.1 | |
| CAI7993077.1 | |
| CAI7993083.1 | MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE |
| CAI7993079.1 | MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE |
| CAI7993081.1 | MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE |
| CAI7993085.1 | LIPID PHOSPHATE PHOSPHATASE |
| CAI7993089.1 | |
| CAI7993091.1 | |
| CAI7993093.1 | ROLLING PEBBLES, ISOFORM B |
| CAI7993095.1 | |
| CAI7993100.1 | |
| CAI7993102.1 | |
| CAI7993104.1 | |
| CAI7993106.1 | |
| CAI7993112.1 | WD REPEAT DOMAIN-CONTAINING FAMILY |
| CAI7993116.1 | |
| CAI7993114.1 | FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 100 |
| CAI7993118.1 | |
| CAI7993122.1 | |
| CAI7993120.1 | |
| CAI7993124.1 | |
| CAI7993129.1 | 40S RIBOSOMAL PROTEIN S24 |
| CAI7993133.1 | VACUOLAR CALCIUM ION TRANSPORTER |
| CAI7993131.1 | VACUOLAR CALCIUM ION TRANSPORTER |
| CAI7993139.1 | VACUOLAR CALCIUM ION TRANSPORTER |
| CAI7993137.1 | VACUOLAR CALCIUM ION TRANSPORTER |
| CAI7993135.1 | |
| CAI7993151.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI7993153.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI7993155.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI7993157.1 | |
| CAI7993159.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI7993161.1 | |
| CAI7993163.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI7993165.1 | |
| CAI7993167.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) |
