Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7992715.1 | SLR1406 PROTEIN |
| CAI7992716.1 | ATPASE-LIKE PROTEIN |
| CAI7992717.1 | POLYSACCHARIDE DEACETYLASE-RELATED |
| CAI7992718.1 | DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED |
| CAI7992719.1 | NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE-RELATED |
| CAI7992720.1 | OROTATE PHOSPHORIBOSYLTRANSFERASE |
| CAI7992721.1 | UNCHARACTERIZED |
| CAI7992722.1 | IRON-SULFUR CLUSTER ASSEMBLY PROTEIN |
| CAI7992723.1 | |
| CAI7992724.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI7992725.1 | |
| CAI7992726.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI7992727.1 | SLR1083 PROTEIN |
| CAI7992728.1 | SLR1083 PROTEIN |
| CAI7992729.1 | ASPARTATE AMINOTRANSFERASE |
| CAI7992730.1 | |
| CAI7992731.1 | |
| CAI7992733.1 | |
| CAI7992735.1 | ROK (REPRESSOR, ORF, KINASE) FAMILY |
| CAI7992737.1 | THIOL:DISULFIDE INTERCHANGE PROTEIN DSBE |
| CAI7992739.1 | |
| CAI7992741.1 | |
| CAI7992743.1 | PROTEIN NRFC |
| CAI7992745.1 | |
| CAI7992747.1 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
| CAI7992749.1 | IRON (METAL) DEPENDENT REPRESSOR, DTXR FAMILY |
| CAI7992751.1 | |
| CAI7992755.1 | COB--COM HETERODISULFIDE REDUCTASE SUBUNIT B 1 |
| CAI7992757.1 | SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT |
| CAI7992759.1 | SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT |
| CAI7992761.1 | NAD KINASE |
| CAI7992763.1 | NADH DEHYDROGENASE |
| CAI7992765.1 | NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 |
| CAI7992767.1 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
| CAI7992769.1 | RIBONUCLEASE H1 |
| CAI7992771.1 | RIBONUCLEASE H1 |
| CAI7992773.1 | |
| CAI7992775.1 | ALPHA-MANNOSIDASE |
| CAI7992777.1 | AVIDIN-RELATED |
| CAI7992779.1 | AVIDIN-RELATED |
| CAI7992783.1 | ACID HYDRATASE |
| CAI7992785.1 | |
| CAI7992787.1 | CATECHOL-2,3-DIOXYGENASE |
| CAI7992789.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI7992791.1 | REGULATOR OF RPOS |
| CAI7992793.1 | NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE |
| CAI7992807.1 | AP-5 COMPLEX SUBUNIT ZETA-1 |
| CAI7992809.1 | AP-5 COMPLEX SUBUNIT ZETA-1 |
| CAI7992805.1 | AP-5 COMPLEX SUBUNIT ZETA-1 |
| CAI7992803.1 | AP-5 COMPLEX SUBUNIT ZETA-1 |
