Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7992303.1 | TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 |
| CAI7992307.1 | MIXED LINEAGE PROTEIN KINASE |
| CAI7992305.1 | MIXED LINEAGE PROTEIN KINASE |
| CAI7992311.1 | MIXED LINEAGE PROTEIN KINASE |
| CAI7992313.1 | MIXED LINEAGE PROTEIN KINASE |
| CAI7992309.1 | MIXED LINEAGE PROTEIN KINASE |
| CAI7992315.1 | MIXED LINEAGE PROTEIN KINASE |
| CAI7992319.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 173 |
| CAI7992317.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 173 |
| CAI7992321.1 | PHOSPHATASE, ORPHAN 1, 2 |
| CAI7992323.1 | PHOSPHATASE, ORPHAN 1, 2 |
| CAI7992325.1 | |
| CAI7992327.1 | RIBOSOMAL RNA PROCESSING PROTEIN 7-RELATED |
| CAI7992333.1 | STEROL O-ACYLTRANSFERASE |
| CAI7992331.1 | STEROL O-ACYLTRANSFERASE |
| CAI7992335.1 | STEROL O-ACYLTRANSFERASE |
| CAI7992329.1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
| CAI7992337.1 | PER1-RELATED |
| CAI7992339.1 | PER1-RELATED |
| CAI7992347.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI7992345.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI7992341.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI7992343.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI7992349.1 | |
| CAI7992351.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI7992357.1 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| CAI7992359.1 | |
| CAI7992361.1 | |
| CAI7992363.1 | |
| CAI7992365.1 | |
| CAI7992367.1 | |
| CAI7992369.1 | |
| CAI7992376.1 | TYPE-5 URACIL-DNA GLYCOSYLASE |
| CAI7992378.1 | SHIKIMATE DEHYDROGENASE |
| CAI7992380.1 | SHIKIMATE KINASE |
| CAI7992382.1 | |
| CAI7992384.1 | 3-DEHYDROQUINATE SYNTHASE |
| CAI7992386.1 | MEMBRANE TRANSPORTER PROTEIN MJ0441-RELATED |
| CAI7992388.1 | |
| CAI7992390.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE |
| CAI7992392.1 | SULFUR CARRIER PROTEIN SLR0821-RELATED |
| CAI7992394.1 | |
| CAI7992396.1 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
| CAI7992398.1 | ATP-DEPENDENT PROTEASE LA (LON) DOMAIN PROTEIN |
| CAI7992400.1 | VITAMIN B12-BINDING PROTEIN |
| CAI7992402.1 | BLR0278 PROTEIN |
| CAI7992404.1 | |
| CAI7992406.1 | ENOYL-COA HYDRATASE |
| CAI7992408.1 | ANTITOXIN HIGA-1 |
| CAI7992419.1 | GEO12009P1 |
