Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7992016.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
| CAI7992017.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
| CAI7992018.1 | PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE |
| CAI7992019.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURS |
| CAI7992020.1 | HISTIDINOL DEHYDROGENASE HDH |
| CAI7992021.1 | |
| CAI7992022.1 | ATP PHOSPHORIBOSYLTRANSFERASE ATP-PRTASE |
| CAI7992023.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI7992024.1 | PEPTIDASE S9 PROLYL OLIGOPEPTIDASE |
| CAI7992025.1 | PEPTIDASE S9 PROLYL OLIGOPEPTIDASE |
| CAI7992026.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI7992027.1 | UVRC/OXIDOREDUCTASE |
| CAI7992028.1 | STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL |
| CAI7992029.1 | |
| CAI7992030.1 | |
| CAI7992031.1 | EXPRESSED PROTEIN |
| CAI7992032.1 | |
| CAI7992034.1 | |
| CAI7992033.1 | |
| CAI7992038.1 | AGAP004327-PA |
| CAI7992037.1 | AGAP004327-PA |
| CAI7992036.1 | |
| CAI7992035.1 | |
| CAI7992039.1 | AGAP004327-PA |
| CAI7992040.1 | AGAP004327-PA |
| CAI7992043.1 | |
| CAI7992042.1 | |
| CAI7992041.1 | |
| CAI7992044.1 | |
| CAI7992046.1 | APOPTOSIS INHIBITOR 5-RELATED |
| CAI7992047.1 | APOPTOSIS INHIBITOR 5-RELATED |
| CAI7992045.1 | APOPTOSIS INHIBITOR 5-RELATED |
| CAI7992048.1 | APOPTOSIS INHIBITOR 5-RELATED |
| CAI7992049.1 | APOPTOSIS INHIBITOR 5-RELATED |
| CAI7992054.1 | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS |
| CAI7992053.1 | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS |
| CAI7992052.1 | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS |
| CAI7992051.1 | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS |
| CAI7992050.1 | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS |
| CAI7992055.1 | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS |
| CAI7992056.1 | DNA-DIRECTED RNA POLYMERASE II, III |
| CAI7992058.1 | 60S RIBOSOMAL PROTEIN L27A |
| CAI7992057.1 | 60S RIBOSOMAL PROTEIN L27A |
| CAI7992060.1 | AKT1 SUBSTRATE 1 PROTEIN |
| CAI7992059.1 | AKT1 SUBSTRATE 1 PROTEIN |
| CAI7992061.1 | |
| CAI7992063.1 | TRANSCRIPTION FACTOR GATA FAMILY MEMBER |
| CAI7992062.1 | TRANSCRIPTION FACTOR GATA FAMILY MEMBER |
| CAI7992064.1 | SPERM-ASSOCIATED ANTIGEN 6 ARMADILLO REPEAT-CONTAINING |
| CAI7992065.1 | PHOSPHATIDYLINOSITOL SYNTHASE |
