Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7991393.1 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
| CAI7991395.1 | NAD(P)H NITROREDUCTASE YDJA-RELATED |
| CAI7991397.1 | LIPOPROTEIN-RELATED |
| CAI7991399.1 | |
| CAI7991401.1 | ENOYL-COA HYDRATASE |
| CAI7991403.1 | THIOSULFATE SULFURTRANSFERASE |
| CAI7991405.1 | HYDROPEROXIDE REDUCTASE |
| CAI7991407.1 | PAREP8-RELATED |
| CAI7991409.1 | METHIONINE SYNTHASE |
| CAI7991411.1 | HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN |
| CAI7991413.1 | CEPHALOSPORIN-C DEACETYLASE |
| CAI7991415.1 | CEPHALOSPORIN-C DEACETYLASE |
| CAI7991417.1 | |
| CAI7991419.1 | |
| CAI7991421.1 | |
| CAI7991422.1 | ANTI-SIGMA FACTOR ANTAGONIST TM_1081-RELATED-RELATED |
| CAI7991423.1 | STAGE II SPORULATION PROTEIN E-RELATED |
| CAI7991424.1 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
| CAI7991425.1 | 5-OXOPROLINASE RELATED |
| CAI7991426.1 | 5-OXOPROLINASE RELATED |
| CAI7991427.1 | TYPE-5 URACIL-DNA GLYCOSYLASE |
| CAI7991428.1 | ACETYL-COA C-ACYLTRANSFERASE |
| CAI7991429.1 | PAREP8-RELATED |
| CAI7991430.1 | |
| CAI7991431.1 | LONG-CHAIN-ALCOHOL OXIDASE |
| CAI7991432.1 | PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE |
| CAI7991433.1 | |
| CAI7991434.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI7991437.1 | 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE |
| CAI7991436.1 | 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE |
| CAI7991435.1 | 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE |
| CAI7991438.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI7991439.1 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
| CAI7991440.1 | HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN |
| CAI7991441.1 | SARCOSINE DEHYDROGENASE-RELATED |
| CAI7991442.1 | POLYSACCHARIDE DEACETYLASE-RELATED |
| CAI7991443.1 | |
| CAI7991444.1 | DEDICATOR OF CYTOKINESIS DOCK |
| CAI7991445.1 | |
| CAI7991446.1 | |
| CAI7991447.1 | |
| CAI7991448.1 | |
| CAI7991449.1 | |
| CAI7991450.1 | |
| CAI7991452.1 | |
| CAI7991451.1 | |
| CAI7991455.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7991454.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7991453.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7991456.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
