Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7990855.1 | NADH-QUINONE OXIDOREDUCTASE SUBUNIT F |
| CAI7990857.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI7990859.1 | OXIDOREDUCTASE FAD/NAD(P)-BINDING DOMAIN PROTEIN |
| CAI7990861.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI7990869.1 | LUD_DOM DOMAIN-CONTAINING PROTEIN |
| CAI7990871.1 | |
| CAI7990873.1 | BLR3294 PROTEIN |
| CAI7990875.1 | XYLOGLUCANASE (EUROFUNG) |
| CAI7990877.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI7990881.1 | PEPTIDYL-TRNA HYDROLASE |
| CAI7990879.1 | PEPTIDYL-TRNA HYDROLASE |
| CAI7990883.1 | PEPTIDYL-TRNA HYDROLASE |
| CAI7990885.1 | PEPTIDYL-TRNA HYDROLASE |
| CAI7990887.1 | NUDIX HYDROLASE, NUDC SUBFAMILY |
| CAI7990889.1 | ENOYL-COA HYDRATASE |
| CAI7990891.1 | |
| CAI7990893.1 | |
| CAI7990895.1 | TYPE III PANTOTHENATE KINASE |
| CAI7990897.1 | |
| CAI7990902.1 | |
| CAI7990900.1 | |
| CAI7990906.1 | |
| CAI7990904.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI7990909.1 | |
| CAI7990911.1 | |
| CAI7990915.1 | |
| CAI7990917.1 | |
| CAI7990919.1 | |
| CAI7990921.1 | |
| CAI7990923.1 | |
| CAI7990926.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI7990936.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI7990941.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI7990940.1 | CYTOKINE RECEPTOR |
| CAI7990939.1 | CYTOKINE RECEPTOR |
| CAI7990937.1 | CYTOKINE RECEPTOR |
| CAI7990938.1 | CYTOKINE RECEPTOR |
| CAI7990942.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI7990944.1 | CYTOKINE RECEPTOR |
| CAI7990943.1 | CYTOKINE RECEPTOR |
| CAI7990945.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI7990947.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI7990946.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI7990935.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI7990949.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI7990948.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI7990950.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI7990934.1 | |
| CAI7990951.1 | |
| CAI7990953.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
