Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7990511.1 | HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE |
| CAI7990513.1 | HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE |
| CAI7990515.1 | HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE |
| CAI7990517.1 | HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE |
| CAI7990519.1 | HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE |
| CAI7990521.1 | N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER |
| CAI7990523.1 | N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER |
| CAI7990529.1 | UNCHARACTERIZED |
| CAI7990527.1 | UNCHARACTERIZED |
| CAI7990525.1 | UNCHARACTERIZED |
| CAI7990531.1 | |
| CAI7990533.1 | REACTIVE OXYGEN SPECIES MODULATOR 1 |
| CAI7990535.1 | 60S RIBOSOMAL PROTEIN L10 |
| CAI7990541.1 | TRANSCRIPTION INITIATION FACTOR IIH-RELATED |
| CAI7990539.1 | TRANSCRIPTION INITIATION FACTOR IIH-RELATED |
| CAI7990537.1 | TRANSCRIPTION INITIATION FACTOR IIH-RELATED |
| CAI7990545.1 | TRANSCRIPTION INITIATION FACTOR IIH-RELATED |
| CAI7990543.1 | TRANSCRIPTION INITIATION FACTOR IIH-RELATED |
| CAI7990549.1 | TRANSCRIPTION INITIATION FACTOR IIH-RELATED |
| CAI7990547.1 | TRANSCRIPTION INITIATION FACTOR IIH-RELATED |
| CAI7990554.1 | INOSITOL 5-PHOSPHATASE |
| CAI7990552.1 | INOSITOL 5-PHOSPHATASE |
| CAI7990550.1 | |
| CAI7990556.1 | INOSITOL 5-PHOSPHATASE |
| CAI7990558.1 | PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1 |
| CAI7990564.1 | NEGATIVE REGULATOR OF VESICLE FORMATION-RELATED |
| CAI7990562.1 | NEGATIVE REGULATOR OF VESICLE FORMATION-RELATED |
| CAI7990560.1 | NEGATIVE REGULATOR OF VESICLE FORMATION-RELATED |
| CAI7990566.1 | NEGATIVE REGULATOR OF VESICLE FORMATION-RELATED |
| CAI7990568.1 | AXIN |
| CAI7990570.1 | REGULATOR OF G PROTEIN SIGNALING |
| CAI7990572.1 | CENTROSOMAL PROTEIN 2 |
| CAI7990576.1 | AMINO ACID TRANSPORTER |
| CAI7990574.1 | AMINO ACID TRANSPORTER |
| CAI7990578.1 | AMINO ACID TRANSPORTER |
| CAI7990580.1 | AMINO ACID TRANSPORTER |
| CAI7990582.1 | |
| CAI7990584.1 | |
| CAI7990595.1 | |
| CAI7990597.1 | ETS |
| CAI7990599.1 | |
| CAI7990615.1 | WD REPEAT-CONTAINING PROTEIN POP1 |
| CAI7990619.1 | WD REPEAT-CONTAINING PROTEIN POP1 |
| CAI7990617.1 | WD40 REPEAT PROTEIN |
| CAI7990621.1 | WD REPEAT-CONTAINING PROTEIN POP1 |
| CAI7990613.1 | WD REPEAT-CONTAINING PROTEIN POP1 |
| CAI7990611.1 | WD REPEAT-CONTAINING PROTEIN POP1 |
| CAI7990609.1 | WD40 REPEAT PROTEIN |
| CAI7990605.1 | U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2 |
| CAI7990607.1 | WD40 REPEAT PROTEIN |
