Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7990324.1 | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 |
| CAI7990334.1 | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 |
| CAI7990332.1 | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 |
| CAI7990330.1 | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 |
| CAI7990328.1 | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 |
| CAI7990326.1 | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 |
| CAI7990336.1 | |
| CAI7990338.1 | |
| CAI7990342.1 | SOLUTE CARRIER FAMILY 25 |
| CAI7990340.1 | SOLUTE CARRIER FAMILY 25 |
| CAI7990344.1 | SOLUTE CARRIER FAMILY 25 |
| CAI7990346.1 | |
| CAI7990356.1 | ADENYLYL CYCLASE-ASSOCIATED PROTEIN |
| CAI7990358.1 | ADENYLYL CYCLASE-ASSOCIATED PROTEIN |
| CAI7990354.1 | ADENYLYL CYCLASE-ASSOCIATED PROTEIN |
| CAI7990348.1 | ADENYLYL CYCLASE-ASSOCIATED PROTEIN |
| CAI7990350.1 | ADENYLYL CYCLASE-ASSOCIATED PROTEIN |
| CAI7990360.1 | ADENYLYL CYCLASE-ASSOCIATED PROTEIN |
| CAI7990362.1 | ADENYLYL CYCLASE-ASSOCIATED PROTEIN |
| CAI7990352.1 | ADENYLYL CYCLASE-ASSOCIATED PROTEIN |
| CAI7990364.1 | ADENYLYL CYCLASE-ASSOCIATED PROTEIN |
| CAI7990370.1 | |
| CAI7990368.1 | |
| CAI7990366.1 | |
| CAI7990372.1 | |
| CAI7990374.1 | |
| CAI7990376.1 | NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 |
| CAI7990378.1 | NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 |
| CAI7990380.1 | NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 |
| CAI7990382.1 | |
| CAI7990384.1 | |
| CAI7990388.1 | |
| CAI7990390.1 | EBNA2 BINDING PROTEIN P100 |
| CAI7990392.1 | EBNA2 BINDING PROTEIN P100 |
| CAI7990394.1 | |
| CAI7990395.1 | |
| CAI7990396.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI7990397.1 | PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN |
| CAI7990398.1 | ZGC:194242 |
| CAI7990399.1 | GLYCINE N-METHYLTRANSFERASE |
| CAI7990400.1 | XYLOGLUCANASE (EUROFUNG) |
| CAI7990402.1 | |
| CAI7990401.1 | |
| CAI7990403.1 | |
| CAI7990405.1 | |
| CAI7990404.1 | |
| CAI7990406.1 | |
| CAI7990407.1 | |
| CAI7990408.1 | |
| CAI7990409.1 |
