Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7989780.1 | SLR1258 PROTEIN |
| CAI7989782.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI7989784.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI7989786.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI7989788.1 | TRANSLATION FACTOR GUF1-RELATED |
| CAI7989790.1 | |
| CAI7989792.1 | DIMETHYLADENOSINE TRANSFERASE |
| CAI7989794.1 | 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE, CHLOROPLASTIC |
| CAI7989796.1 | 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE, CHLOROPLASTIC |
| CAI7989798.1 | ACETYL-COENZYME A SYNTHETASE |
| CAI7989800.1 | ACETYL-COENZYME A SYNTHETASE |
| CAI7989802.1 | ACYL-COENZYME A SYNTHETASE |
| CAI7989806.1 | POLYPHOSPHATE:AMP PHOSPHOTRANSFERASE-RELATED |
| CAI7989804.1 | POLYPHOSPHATE:AMP PHOSPHOTRANSFERASE-RELATED |
| CAI7989813.1 | GABA-B RECEPTOR |
| CAI7989811.1 | GABA-B RECEPTOR |
| CAI7989809.1 | GABA-B RECEPTOR |
| CAI7989817.1 | ALDEHYDE DEHYDROGENASE |
| CAI7989818.1 | |
| CAI7989820.1 | PLEXIN |
| CAI7989819.1 | PLEXIN |
| CAI7989821.1 | PLEXIN |
| CAI7989822.1 | PLEXIN |
| CAI7989824.1 | PLEXIN |
| CAI7989823.1 | |
| CAI7989825.1 | |
| CAI7989826.1 | |
| CAI7989829.1 | |
| CAI7989828.1 | |
| CAI7989827.1 | |
| CAI7989830.1 | |
| CAI7989831.1 | |
| CAI7989832.1 | |
| CAI7989833.1 | |
| CAI7989834.1 | |
| CAI7989836.1 | |
| CAI7989835.1 | |
| CAI7989837.1 | |
| CAI7989840.1 | |
| CAI7989839.1 | |
| CAI7989838.1 | |
| CAI7989841.1 | |
| CAI7989842.1 | |
| CAI7989843.1 | RNA POLYMERASE II CTD PHOSPHATASE |
| CAI7989844.1 | RNA POLYMERASE II CTD PHOSPHATASE |
| CAI7989846.1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3 |
| CAI7989845.1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3 |
| CAI7989847.1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3 |
| CAI7989853.1 | NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
| CAI7989852.1 | NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
