About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI7989071.1AMIDASE
CAI7989073.1FAMILY N-ACETYLTRANSFERASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G01380)-RELATED
CAI7989075.1-
CAI7989077.1DC12-RELATED
CAI7989079.1-
CAI7989081.1SHORT-CHAIN DEHYDROGENASE/REDUCTASE
CAI7989083.1XANTHINE DEHYDROGENASE
CAI7989085.1ABC TRANSPORTER ATP-BINDING SUBUNIT
CAI7989087.1ABC TRANSPORTER ATP-BINDING SUBUNIT
CAI7989089.1DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7B
CAI7989091.1MITOCHONDRIAL PEPTIDE METHIONINE SULFOXIDE REDUCTASE
CAI7989093.1HIGH-AFFINITY ZINC UPTAKE SYSTEM PROTEIN ZNUA-RELATED
CAI7989095.1METAL TRANSPORT SYSTEM ATP-BINDING PROTEIN TM_0124-RELATED
CAI7989097.1ABC-TRANSPORTER METAL-BINDING PROTEIN
CAI7989099.1HIGH-AFFINITY ZINC UPTAKE SYSTEM PROTEIN ZNUA-RELATED
CAI7989100.1UNCHARACTERIZED
CAI7989101.1LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED
CAI7989102.1UNCHARACTERIZED
CAI7989103.1UNCHARACTERIZED
CAI7989104.1-
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