Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7989176.1 | ARYLSULFATASE FAMILY MEMBER |
| CAI7989178.1 | PEPTIDASE S49 |
| CAI7989182.1 | NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE |
| CAI7989180.1 | NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE |
| CAI7989184.1 | METHANETHIOL OXIDASE |
| CAI7989186.1 | ATP7, ISOFORM B |
| CAI7989188.1 | LEXA REPRESSOR |
| CAI7989190.1 | |
| CAI7989192.1 | |
| CAI7989194.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI7989196.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI7989199.1 | |
| CAI7989224.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI7989222.1 | |
| CAI7989220.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI7989226.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI7989228.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI7989216.1 | CYTOKINE RECEPTOR |
| CAI7989214.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI7989218.1 | CYTOKINE RECEPTOR |
| CAI7989212.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI7989210.1 | CYTOKINE RECEPTOR |
| CAI7989208.1 | CYTOKINE RECEPTOR |
| CAI7989230.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI7989234.1 | |
| CAI7989236.1 | |
| CAI7989240.1 | |
| CAI7989246.1 | |
| CAI7989244.1 | |
| CAI7989248.1 | |
| CAI7989254.1 | |
| CAI7989252.1 | |
| CAI7989258.1 | |
| CAI7989250.1 | |
| CAI7989256.1 | |
| CAI7989260.1 | |
| CAI7989242.1 | S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE RELATED |
| CAI7989281.1 | |
| CAI7989277.1 | |
| CAI7989279.1 | FRINGE-RELATED |
| CAI7989283.1 | FRINGE-RELATED |
| CAI7989285.1 | |
| CAI7989291.1 | OS-9-RELATED |
| CAI7989287.1 | OS-9-RELATED |
| CAI7989293.1 | OS-9-RELATED |
| CAI7989289.1 | OS-9-RELATED |
| CAI7989295.1 | |
| CAI7989297.1 | PROTEIN CBG23806 |
| CAI7989301.1 | SIALIDASE |
| CAI7989299.1 |
