Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7989016.1 | PROTEIN YIPPEE-LIKE CG15309-RELATED |
| CAI7989018.1 | |
| CAI7989022.1 | |
| CAI7989020.1 | |
| CAI7989024.1 | |
| CAI7989026.1 | POLY A POLYMERASE CID PAP -RELATED |
| CAI7989028.1 | POLY A POLYMERASE CID PAP -RELATED |
| CAI7989034.1 | PRE-MRNA SPLICING FACTOR PRP8 |
| CAI7989032.1 | RAPSYN-RELATED |
| CAI7989030.1 | RAPSYN-RELATED |
| CAI7989038.1 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
| CAI7989036.1 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
| CAI7989042.1 | |
| CAI7989046.1 | |
| CAI7989048.1 | |
| CAI7989050.1 | |
| CAI7989054.1 | |
| CAI7989056.1 | |
| CAI7989058.1 | |
| CAI7989060.1 | NACHT DOMAIN-CONTAINING PROTEIN |
| CAI7989071.1 | AMIDASE |
| CAI7989073.1 | FAMILY N-ACETYLTRANSFERASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G01380)-RELATED |
| CAI7989075.1 | - |
| CAI7989077.1 | DC12-RELATED |
| CAI7989079.1 | |
| CAI7989081.1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE |
| CAI7989083.1 | XANTHINE DEHYDROGENASE |
| CAI7989085.1 | ABC TRANSPORTER ATP-BINDING SUBUNIT |
| CAI7989087.1 | ABC TRANSPORTER ATP-BINDING SUBUNIT |
| CAI7989089.1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7B |
| CAI7989091.1 | MITOCHONDRIAL PEPTIDE METHIONINE SULFOXIDE REDUCTASE |
| CAI7989093.1 | HIGH-AFFINITY ZINC UPTAKE SYSTEM PROTEIN ZNUA-RELATED |
| CAI7989095.1 | METAL TRANSPORT SYSTEM ATP-BINDING PROTEIN TM_0124-RELATED |
| CAI7989097.1 | ABC-TRANSPORTER METAL-BINDING PROTEIN |
| CAI7989099.1 | HIGH-AFFINITY ZINC UPTAKE SYSTEM PROTEIN ZNUA-RELATED |
| CAI7989100.1 | UNCHARACTERIZED |
| CAI7989101.1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
| CAI7989102.1 | UNCHARACTERIZED |
| CAI7989103.1 | UNCHARACTERIZED |
| CAI7989104.1 | |
| CAI7989106.1 | |
| CAI7989105.1 | |
| CAI7989109.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI7989108.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI7989110.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI7989107.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI7989111.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI7989113.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI7989112.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI7989115.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
