Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7989303.1 | |
| CAI7989307.1 | TENASCIN |
| CAI7989305.1 | TENASCIN |
| CAI7989309.1 | |
| CAI7989311.1 | |
| CAI7989313.1 | |
| CAI7989315.1 | G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN |
| CAI7989317.1 | |
| CAI7989319.1 | |
| CAI7989321.1 | |
| CAI7989323.1 | |
| CAI7989325.1 | SODIUM/CALCIUM EXCHANGER |
| CAI7989327.1 | |
| CAI7989329.1 | |
| CAI7989331.1 | |
| CAI7989333.1 | |
| CAI7989376.1 | SERINE ENDOPROTEASE DEGS |
| CAI7989380.1 | ALDEHYDE DEHYDROGENASE-RELATED |
| CAI7989378.1 | ALDEHYDE DEHYDROGENASE-RELATED |
| CAI7989382.1 | - |
| CAI7989384.1 | |
| CAI7989388.1 | METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE |
| CAI7989386.1 | METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE |
| CAI7989390.1 | MOXR FAMILY PROTEIN |
| CAI7989392.1 | - |
| CAI7989394.1 | MAGNESIUM-CHELATASE SUBUNIT CHLI |
| CAI7989396.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI7989398.1 | MOLYBDENUM TRANSPORT SYSTEM PERMEASE PROTEIN MODB |
| CAI7989400.1 | 50S RIBOSOMAL PROTEIN L34 |
| CAI7989402.1 | EPOXIDE HYDROLASE 1-RELATED |
| CAI7989404.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI7989406.1 | METHIONINE SYNTHASE |
| CAI7989408.1 | AMIDOHYDROLASE |
| CAI7989410.1 | LIPOPROTEIN-RELATED |
| CAI7989412.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI7989416.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI7989414.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI7989420.1 | OXIDOREDUCTASE WITH IRON-SULFUR SUBUNIT |
| CAI7989418.1 | OXIDOREDUCTASE WITH IRON-SULFUR SUBUNIT |
| CAI7989422.1 | MONOACYLGLYCEROL LIPASE |
| CAI7989424.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI7989426.1 | AMINO ACID IMPORT ATP-BINDING PROTEIN |
| CAI7989428.1 | AMINO ACID IMPORT ATP-BINDING PROTEIN |
| CAI7989430.1 | BETA-LACTAMASE-RELATED |
| CAI7989432.1 | GLYCINE CLEAVAGE SYSTEM H PROTEIN |
| CAI7989434.1 | AMINOMETHYLTRANSFERASE |
| CAI7989438.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI7989436.1 | GLYCINE CLEAVAGE SYSTEM P-PROTEIN |
| CAI7989440.1 | GLYCINE CLEAVAGE SYSTEM P-PROTEIN |
| CAI7989442.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
