Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7988621.1 | ABHYDROLASE DOMAIN-CONTAINING PROTEIN |
| CAI7988628.1 | PROTEIN C7ORF21 |
| CAI7988626.1 | PROTEIN C7ORF21 |
| CAI7988630.1 | |
| CAI7988633.1 | |
| CAI7988635.1 | |
| CAI7988637.1 | |
| CAI7988639.1 | TRANSFERASE, PUTATIVE-RELATED |
| CAI7988644.1 | |
| CAI7988648.1 | ANKYRIN REPEAT FAMILY A |
| CAI7988653.1 | CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED |
| CAI7988655.1 | ANKYRIN REPEAT FAMILY A |
| CAI7988646.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI7988657.1 | KYNURENINE 3-MONOOXYGENASE |
| CAI7988685.1 | SKP1 |
| CAI7988687.1 | |
| CAI7988689.1 | |
| CAI7988692.1 | APOLIPOPROTEIN L |
| CAI7988694.1 | APOLIPOPROTEIN L |
| CAI7988696.1 | APOLIPOPROTEIN L |
| CAI7988698.1 | APOLIPOPROTEIN L |
| CAI7988704.1 | CELL DIVISION PROTEIN KINASE |
| CAI7988702.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| CAI7988700.1 | |
| CAI7988710.1 | 2-HYDROXYACYL-COA LYASE |
| CAI7988712.1 | 2-HYDROXYACYL-COA LYASE |
| CAI7988708.1 | 2-HYDROXYACYL-COA LYASE |
| CAI7988706.1 | 2-HYDROXYACYL-COA LYASE |
| CAI7988714.1 | 2-HYDROXYACYL-COA LYASE |
| CAI7988716.1 | 2-HYDROXYACYL-COA LYASE |
| CAI7988718.1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
| CAI7988722.1 | CULLIN |
| CAI7988720.1 | CULLIN |
| CAI7988724.1 | CULLIN |
| CAI7988726.1 | CULLIN |
| CAI7988728.1 | CULLIN |
| CAI7988730.1 | MYOTROPHIN |
| CAI7988734.1 | AMINOACYLASE-1 |
| CAI7988732.1 | AMINOACYLASE-1 |
| CAI7988740.1 | STEROL O-ACYLTRANSFERASE |
| CAI7988738.1 | STEROL O-ACYLTRANSFERASE |
| CAI7988736.1 | STEROL O-ACYLTRANSFERASE |
| CAI7988741.1 | |
| CAI7988745.1 | GOLGI MEMBRANE PROTEIN YIP1 |
| CAI7988743.1 | GOLGI MEMBRANE PROTEIN YIP1 |
| CAI7988747.1 | GOLGI MEMBRANE PROTEIN YIP1 |
| CAI7988751.1 | |
| CAI7988754.1 | |
| CAI7988756.1 | UBX DOMAIN-CONTAINING PROTEIN 4 |
| CAI7988758.1 | UBX DOMAIN-CONTAINING PROTEIN 4 |
