Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7988897.1 | CELL DIVISION PROTEIN FTSA-RELATED |
| CAI7988899.1 | CELL DIVISION PROTEIN FTSQ |
| CAI7988909.1 | UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE |
| CAI7988907.1 | UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE-RELATED |
| CAI7988905.1 | UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE-RELATED |
| CAI7988901.1 | UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE-RELATED |
| CAI7988903.1 | UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE-RELATED |
| CAI7988917.1 | PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE |
| CAI7988915.1 | PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE |
| CAI7988913.1 | PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE |
| CAI7988911.1 | PHOSPHO-N-ACETYLMURAMOYL-PENTAPEPTIDE-TRANSFERASE |
| CAI7988919.1 | UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE |
| CAI7988921.1 | MUR LIGASE FAMILY MEMBER |
| CAI7988923.1 | PEPTIDOGLYCAN D,D-TRANSPEPTIDASE |
| CAI7988925.1 | |
| CAI7988927.1 | S-ADENOSYL-METHYLTRANSFERASE MRAW |
| CAI7988929.1 | ANTI-SIGMA FACTOR ANTAGONIST TM_1081-RELATED-RELATED |
| CAI7988933.1 | TRANSCRIPTIONAL REGULATOR MRAZ |
| CAI7988935.1 | TRANSCRIPTIONAL REGULATOR MRAZ |
| CAI7988931.1 | TRANSCRIPTIONAL REGULATOR MRAZ |
| CAI7988937.1 | |
| CAI7988939.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI7988941.1 | 5-OXOPROLINASE RELATED |
| CAI7988943.1 | 5-OXOPROLINASE RELATED |
| CAI7988945.1 | |
| CAI7988951.1 | |
| CAI7988949.1 | |
| CAI7988953.1 | PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN |
| CAI7988957.1 | |
| CAI7988955.1 | |
| CAI7988959.1 | F-ACTIN-CAPPING PROTEIN SUBUNIT BETA |
| CAI7988967.1 | UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN |
| CAI7988965.1 | UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN |
| CAI7988969.1 | UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN |
| CAI7988971.1 | UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN |
| CAI7988973.1 | UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN |
| CAI7988975.1 | UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN |
| CAI7988977.1 | UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN |
| CAI7988994.1 | RNA-BINDING PROTEIN LUC7-RELATED |
| CAI7988992.1 | RNA-BINDING PROTEIN LUC7-RELATED |
| CAI7988996.1 | RNA-BINDING PROTEIN LUC7-RELATED |
| CAI7989000.1 | NGG1 INTERACTING FACTOR 3 |
| CAI7988998.1 | NGG1 INTERACTING FACTOR 3 |
| CAI7989002.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23 |
| CAI7989006.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23 |
| CAI7989008.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23 |
| CAI7989004.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23 |
| CAI7989010.1 | CELL CYCLE CONTROL PROTEIN CWF25 |
| CAI7989012.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| CAI7989014.1 | PROTEIN YIPPEE-LIKE CG15309-RELATED |
