Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7989544.1 | HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER |
| CAI7989546.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI7989552.1 | TYPE-5 URACIL-DNA GLYCOSYLASE |
| CAI7989548.1 | TYPE-5 URACIL-DNA GLYCOSYLASE |
| CAI7989550.1 | TYPE-5 URACIL-DNA GLYCOSYLASE |
| CAI7989554.1 | 5-OXOPROLINASE RELATED |
| CAI7989556.1 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
| CAI7989558.1 | 5-OXOPROLINASE RELATED |
| CAI7989560.1 | ALANYL-TRNA EDITING PROTEIN |
| CAI7989564.1 | |
| CAI7989571.1 | NAD-DEPENDENT ALCOHOL DEHYDROGENASE |
| CAI7989573.1 | BCDNA.GH03377 |
| CAI7989575.1 | PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE |
| CAI7989577.1 | SECRETED GLYCOSYL HYDROLASE |
| CAI7989579.1 | REGULATORY PROTEIN RECX FAMILY PROTEIN |
| CAI7989581.1 | ALANYL-TRNA SYNTHETASE |
| CAI7989583.1 | GENERAL STRESS PROTEIN |
| CAI7989585.1 | PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE-RELATED |
| CAI7989587.1 | |
| CAI7989589.1 | IMPORT ATP-BINDING PROTEIN |
| CAI7989591.1 | NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN-RELATED |
| CAI7989593.1 | HYDROXYPYRUVATE ISOMERASE |
| CAI7989595.1 | MALONATE-SEMIALDEHYDE DEHYDROGENASE |
| CAI7989597.1 | TAIL-SPECIFIC PROTEASE |
| CAI7989599.1 | TRANSAMIDASE |
| CAI7989607.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI7989605.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI7989603.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI7989601.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI7989609.1 | UVRABC SYSTEM PROTEIN A |
| CAI7989611.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI7989616.1 | |
| CAI7989618.1 | |
| CAI7989625.1 | KELCH PROTEIN |
| CAI7989627.1 | KELCH PROTEIN |
| CAI7989623.1 | KELCH PROTEIN |
| CAI7989621.1 | KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED |
| CAI7989620.1 | KELCH PROTEIN |
| CAI7989630.1 | |
| CAI7989658.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI7989660.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI7989662.1 | CITRATE SYNTHASE |
| CAI7989664.1 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER |
| CAI7989666.1 | RIBOSOMAL PROTEIN S7 |
| CAI7989668.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI7989670.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI7989672.1 | 50S RIBOSOMAL PROTEIN L3 |
| CAI7989674.1 | 50S RIBOSOMAL PROTEIN L4 |
| CAI7989676.1 | RIBOSOMAL PROTEIN L2 |
| CAI7989678.1 | 30S/40S RIBOSOMAL PROTEIN S3 |
