Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7989851.1 | NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
| CAI7989850.1 | NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
| CAI7989849.1 | NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
| CAI7989848.1 | NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
| CAI7989854.1 | NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
| CAI7989855.1 | NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
| CAI7989856.1 | NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
| CAI7989858.1 | |
| CAI7989857.1 | |
| CAI7989859.1 | HEAT SHOCK TRANSCRIPTION FACTOR |
| CAI7989860.1 | HEAT SHOCK TRANSCRIPTION FACTOR |
| CAI7989861.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI7989862.1 | |
| CAI7989863.1 | SINGLE-STRAND SELECTIVE MONOFUNCTIONAL URACIL DNA GLYCOSYLASE |
| CAI7989870.1 | NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER |
| CAI7989866.1 | NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER |
| CAI7989868.1 | NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER |
| CAI7989864.1 | NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER |
| CAI7989872.1 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
| CAI7989874.1 | ACYL-COA-BINDING PROTEIN, ACBP |
| CAI7989884.1 | MYOTROPHIN |
| CAI7989882.1 | MYOTROPHIN |
| CAI7989886.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| CAI7989888.1 | |
| CAI7989890.1 | |
| CAI7989892.1 | |
| CAI7989898.1 | CELL CYCLE CONTROL PROTEIN 50 |
| CAI7989896.1 | CELL CYCLE CONTROL PROTEIN 50 |
| CAI7989894.1 | |
| CAI7989900.1 | CELL CYCLE CONTROL PROTEIN 50 |
| CAI7989908.1 | LEUCYL-TRNA SYNTHETASE |
| CAI7989910.1 | LEUCYL-TRNA SYNTHETASE |
| CAI7989912.1 | LEUCYL-TRNA SYNTHETASE |
| CAI7989914.1 | LEUCYL-TRNA SYNTHETASE |
| CAI7989916.1 | LEUCYL-TRNA SYNTHETASE |
| CAI7989918.1 | |
| CAI7989920.1 | |
| CAI7989922.1 | |
| CAI7989929.1 | |
| CAI7989927.1 | |
| CAI7989931.1 | |
| CAI7989935.1 | |
| CAI7989933.1 | |
| CAI7989941.1 | |
| CAI7989939.1 | |
| CAI7989937.1 | |
| CAI7989943.1 | |
| CAI7989949.1 | DIHYDROXY-ACID DEHYDRATASE DAD |
| CAI7989951.1 | DIHYDROXY-ACID DEHYDRATASE DAD |
| CAI7989953.1 | DIHYDROXY-ACID DEHYDRATASE DAD |
