Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7990076.1 | CYTOCHROME C-TYPE BIOGENESIS PROTEIN HI_1454-RELATED |
| CAI7990078.1 | C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED |
| CAI7990082.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI7990080.1 | S-ADENOSYLMETHIONINE:TRNA RIBOSYLTRANSFERASE-ISOMERASE |
| CAI7990084.1 | ACID HYDRATASE |
| CAI7990089.1 | 6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE DMRL SYNTHASE LUMAZINE SYNTHASE |
| CAI7990097.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI7990095.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI7990093.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI7990091.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI7990099.1 | RIBOFLAVIN SYNTHASE ALPHA CHAIN |
| CAI7990101.1 | BLL5662 PROTEIN-RELATED |
| CAI7990103.1 | |
| CAI7990105.1 | SLR1189 PROTEIN |
| CAI7990107.1 | |
| CAI7990109.1 | METHYLCOBAMIDE:COM METHYLTRANSFERASE MTBA |
| CAI7990111.1 | METHIONINE SYNTHASE |
| CAI7990113.1 | METHIONINE SYNTHASE |
| CAI7990115.1 | |
| CAI7990117.1 | AQUAPORIN OR AQUAGLYCEROPORIN RELATED |
| CAI7990129.1 | NEPHRIN |
| CAI7990131.1 | |
| CAI7990133.1 | |
| CAI7990135.1 | |
| CAI7990137.1 | |
| CAI7990139.1 | |
| CAI7990141.1 | 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE |
| CAI7990145.1 | RBM25 PROTEIN |
| CAI7990143.1 | RBM25 PROTEIN |
| CAI7990147.1 | RFWD3 PROTEIN |
| CAI7990149.1 | RFWD3 PROTEIN |
| CAI7990151.1 | RFWD3 PROTEIN |
| CAI7990153.1 | AQUAPORIN OR AQUAGLYCEROPORIN RELATED |
| CAI7990155.1 | RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER |
| CAI7990157.1 | RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER |
| CAI7990159.1 | RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER |
| CAI7990165.1 | |
| CAI7990163.1 | MIS18-BINDING PROTEIN 1 |
| CAI7990161.1 | |
| CAI7990173.1 | DIHYDROPYRIMIDINE DEHYDROGENASE [NADP(+)] |
| CAI7990175.1 | DIHYDROPYRIMIDINE DEHYDROGENASE [NADP(+)] |
| CAI7990183.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI7990181.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI7990185.1 | CYTOKINE RECEPTOR |
| CAI7990187.1 | CYTOKINE RECEPTOR |
| CAI7990189.1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| CAI7990191.1 | |
| CAI7990179.1 | NKAP DOMAIN-CONTAINING 1 |
| CAI7990177.1 | NKAP DOMAIN-CONTAINING 1 |
| CAI7990193.1 | FIBRILLIN-RELATED |
