Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7989680.1 | 50S/60S RIBOSOMAL PROTEIN L16 |
| CAI7989682.1 | 60S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29 |
| CAI7989684.1 | 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER |
| CAI7989686.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
| CAI7989690.1 | 30S RIBOSOMAL PROTEIN S14 |
| CAI7989688.1 | 30S RIBOSOMAL PROTEIN S14 |
| CAI7989692.1 | 40S RIBOSOMAL PROTEIN S15A |
| CAI7989694.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
| CAI7989696.1 | 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL |
| CAI7989698.1 | 50S RIBOSOMAL PROTEIN L15 |
| CAI7989700.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI7989702.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI7989704.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI7989706.1 | NUCLEOTIDE KINASE |
| CAI7989708.1 | METHIONINE AMINOPEPTIDASE |
| CAI7989710.1 | 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 |
| CAI7989712.1 | 30S 40S RIBOSOMAL PROTEIN |
| CAI7989714.1 | |
| CAI7989716.1 | RIBOSOMAL PROTEIN L17 |
| CAI7989718.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI7989720.1 | |
| CAI7989722.1 | SUCCINYL-COA--D-CITRAMALATE COA-TRANSFERASE |
| CAI7989724.1 | |
| CAI7989726.1 | GRPE PROTEIN |
| CAI7989728.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI7989730.1 | GLUTAMINE-TRNA LIGASE |
| CAI7989732.1 | TRANSCRIPTIONAL REGULATOR, MARR FAMILY |
| CAI7989734.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI7989736.1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
| CAI7989742.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI7989740.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI7989738.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI7989744.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI7989746.1 | ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL |
| CAI7989748.1 | GTPASE DER |
| CAI7989750.1 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
| CAI7989752.1 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
| CAI7989754.1 | ELECTRON TRANSFER FLAVOPROTEIN BETA SUBUNIT LYSINE METHYLTRANSFERASE |
| CAI7989756.1 | DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED |
| CAI7989758.1 | METALLOPEPTIDASE M28 FAMILY MEMBER |
| CAI7989760.1 | |
| CAI7989762.1 | COPROPORPHYRINIGEN III OXIDASE |
| CAI7989764.1 | COPROPORPHYRINIGEN III OXIDASE |
| CAI7989766.1 | |
| CAI7989768.1 | REPLICATIVE DNA HELICASE DNAB |
| CAI7989770.1 | CATION EFFLUX PROTEIN/ ZINC TRANSPORTER |
| CAI7989772.1 | 6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE DMRL SYNTHASE LUMAZINE SYNTHASE |
| CAI7989774.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI7989776.1 | DIHYDROFOLATE REDUCTASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_8G06820) |
| CAI7989778.1 | DCTP DEAMINASE |
