Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7989955.1 | DIHYDROXY-ACID DEHYDRATASE DAD |
| CAI7989957.1 | DIHYDROXY-ACID DEHYDRATASE DAD |
| CAI7989960.1 | ACYL-COA DEHYDROGENASE |
| CAI7989962.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI7989967.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI7989969.1 | 30S RIBOSOMAL PROTEIN S1 |
| CAI7989971.1 | |
| CAI7989973.1 | VALYL-TRNA SYNTHETASES |
| CAI7989975.1 | |
| CAI7989977.1 | SHIKIMATE DEHYDROGENASE |
| CAI7989979.1 | CHORISMATE SYNTHASE |
| CAI7989981.1 | - |
| CAI7989983.1 | P450, PUTATIVE (EUROFUNG)-RELATED |
| CAI7989985.1 | P450, PUTATIVE (EUROFUNG)-RELATED |
| CAI7989987.1 | P450, PUTATIVE (EUROFUNG)-RELATED |
| CAI7989989.1 | P450, PUTATIVE (EUROFUNG)-RELATED |
| CAI7989998.1 | |
| CAI7990000.1 | |
| CAI7990002.1 | |
| CAI7990006.1 | WSCD FAMILY MEMBER CG9164 |
| CAI7990004.1 | WSCD FAMILY MEMBER CG9164 |
| CAI7990010.1 | WSCD FAMILY MEMBER CG9164 |
| CAI7990012.1 | WSCD FAMILY MEMBER CG9164 |
| CAI7990008.1 | WSCD FAMILY MEMBER CG9164 |
| CAI7990016.1 | WSCD FAMILY MEMBER CG9164 |
| CAI7990014.1 | WSCD FAMILY MEMBER CG9164 |
| CAI7990018.1 | |
| CAI7990021.1 | SACSIN |
| CAI7990023.1 | |
| CAI7990025.1 | GUANINE NUCLEOTIDE EXCHANGE C9ORF72 |
| CAI7990032.1 | |
| CAI7990036.1 | |
| CAI7990030.1 | |
| CAI7990038.1 | |
| CAI7990040.1 | |
| CAI7990042.1 | CYTOKINE RECEPTOR |
| CAI7990044.1 | CYTOKINE RECEPTOR |
| CAI7990046.1 | |
| CAI7990052.1 | - |
| CAI7990054.1 | ACETOLACTATE SYNTHASE, SMALL SUBUNIT |
| CAI7990056.1 | SORBITOL DEHYDROGENASE |
| CAI7990058.1 | 5-KETO-D-GLUCONATE 5-REDUCTASE |
| CAI7990060.1 | |
| CAI7990062.1 | |
| CAI7990064.1 | DNA-3-METHYLADENINE GLYCOSYLASE 1 |
| CAI7990066.1 | PEPTIDASE S9 PROLYL OLIGOPEPTIDASE |
| CAI7990068.1 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
| CAI7990070.1 | SUPERFAMILY HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G16580)-RELATED |
| CAI7990072.1 | GLYOXALASE FAMILY PROTEIN |
| CAI7990074.1 |
