About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI7989125.1FLAVIN-DEPENDENT THYMIDYLATE SYNTHASE
CAI7989126.1METHYLMALONYL-COA EPIMERASE
CAI7989127.1RNA POLYMERASE ECF-TYPE SIGMA FACTO
CAI7989128.1-
CAI7989129.1ACETATE--COA LIGASE [ADP-FORMING]
CAI7989130.1THIAMINE PYROPHOSPHATE ENZYMES
CAI7989131.1SUA5
CAI7989132.1GERANYLGERANYL PYROPHOSPHATE SYNTHASE
CAI7989133.1PHOSPHOGLYCERATE KINASE
CAI7989134.1COFACTOR-INDEPENDENT PHOSPHOGLYCERATE MUTASE
CAI7989135.1TRIOSEPHOSPHATE ISOMERASE
CAI7989136.1TRNA DIMETHYLALLYLTRANSFERASE
CAI7989137.1GTP-BINDING PROTEIN HFLX
CAI7989138.13-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210)
CAI7989142.1CYTOKINE RECEPTOR
CAI7989143.1CYTOKINE RECEPTOR
CAI7989141.1CYTOKINE RECEPTOR
CAI7989144.1CYTOKINE RECEPTOR
CAI7989140.1CYTOKINE RECEPTOR
CAI7989139.1CYTOKINE RECEPTOR
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