Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7990195.1 | |
| CAI7990197.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI7990209.1 | |
| CAI7990213.1 | |
| CAI7990215.1 | |
| CAI7990211.1 | |
| CAI7990217.1 | |
| CAI7990219.1 | |
| CAI7990205.1 | |
| CAI7990207.1 | |
| CAI7990203.1 | |
| CAI7990201.1 | |
| CAI7990199.1 | |
| CAI7990227.1 | |
| CAI7990229.1 | |
| CAI7990231.1 | |
| CAI7990225.1 | |
| CAI7990233.1 | |
| CAI7990235.1 | |
| CAI7990237.1 | |
| CAI7990239.1 | |
| CAI7990251.1 | AGAP003327-PA |
| CAI7990249.1 | AGAP003327-PA |
| CAI7990257.1 | AGAP003327-PA |
| CAI7990255.1 | AGAP003327-PA |
| CAI7990253.1 | AGAP003327-PA |
| CAI7990259.1 | AGAP003327-PA |
| CAI7990261.1 | AGAP003327-PA |
| CAI7990265.1 | AGAP003327-PA |
| CAI7990263.1 | AGAP003327-PA |
| CAI7990267.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI7990269.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI7990271.1 | |
| CAI7990273.1 | |
| CAI7990275.1 | |
| CAI7990277.1 | |
| CAI7990283.1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| CAI7990281.1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| CAI7990279.1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| CAI7990287.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI7990289.1 | H REPEAT-ASSOCIATED PREDICTED TRANSPOSASE |
| CAI7990294.1 | 50S RIBOSOMAL PROTEIN L28 |
| CAI7990296.1 | |
| CAI7990302.1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN |
| CAI7990300.1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN |
| CAI7990298.1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN |
| CAI7990304.1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN |
| CAI7990307.1 | N-ACYLNEURAMINATE-9-PHOSPHATASE |
| CAI7990309.1 | D-THREO-ALDOSE 1-DEHYDROGENASE |
| CAI7990322.1 | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 |
