Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7989444.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI7989446.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED |
| CAI7989448.1 | DETHIOBIOTIN SYNTHETASE |
| CAI7989450.1 | OXIDOREDUCTASE, ALDO/KETO REDUCTASE FAMILY PROTEIN |
| CAI7989452.1 | |
| CAI7989454.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_1G13630) |
| CAI7989456.1 | SODIUM ION/PROTON ANTIPORTER NHAA-RELATED |
| CAI7989458.1 | |
| CAI7989460.1 | |
| CAI7989462.1 | |
| CAI7989464.1 | ELONGATION FACTOR TU-RELATED |
| CAI7989466.1 | ELONGATION FACTOR TU-RELATED |
| CAI7989468.1 | ELONGATION FACTOR TU-RELATED |
| CAI7989470.1 | 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL |
| CAI7989472.1 | 39S RIBOSOMAL PROTEIN L10, MITOCHONDRIAL |
| CAI7989474.1 | 39S RIBOSOMAL PROTEIN L12 |
| CAI7989480.1 | 39S RIBOSOMAL PROTEIN L12 |
| CAI7989476.1 | 39S RIBOSOMAL PROTEIN L12 |
| CAI7989478.1 | 39S RIBOSOMAL PROTEIN L12 |
| CAI7989482.1 | 39S RIBOSOMAL PROTEIN L12 |
| CAI7989484.1 | 7-ALPHA-HYDROXYSTEROID DEHYDROGENASE |
| CAI7989486.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI7989490.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI7989488.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI7989492.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI7989494.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI7989496.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI7989498.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI7989500.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI7989502.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI7989504.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI7989506.1 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
| CAI7989508.1 | SULFOQUINOVOSYL TRANSFERASE SQD2 |
| CAI7989510.1 | |
| CAI7989512.1 | |
| CAI7989518.1 | GTP CYCLOHYDROLASE I |
| CAI7989516.1 | GTP CYCLOHYDROLASE I |
| CAI7989514.1 | GTP CYCLOHYDROLASE I |
| CAI7989520.1 | CYSTATHIONINE BETA-SYNTHASE |
| CAI7989522.1 | HOMOSERINE DEHYDROGENASE |
| CAI7989524.1 | |
| CAI7989526.1 | |
| CAI7989528.1 | 30S RIBOSOMAL PROTEIN S18 |
| CAI7989530.1 | |
| CAI7989532.1 | SINGLE-STRANDED DNA-BINDING PROTEIN |
| CAI7989534.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 |
| CAI7989536.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI7989538.1 | LEUCINE DEHYDROGENASE |
| CAI7989540.1 | LEUCINE DEHYDROGENASE |
| CAI7989542.1 | LEUCINE DEHYDROGENASE |
