Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7988762.1 | UBX DOMAIN-CONTAINING PROTEIN 4 |
| CAI7988760.1 | |
| CAI7988764.1 | |
| CAI7988766.1 | |
| CAI7988773.1 | |
| CAI7988781.1 | SAD1/UNC-84-LIKE PROTEIN-RELATED |
| CAI7988783.1 | |
| CAI7988779.1 | SAD1/UNC-84-LIKE PROTEIN-RELATED |
| CAI7988777.1 | SAD1/UNC-84-LIKE PROTEIN-RELATED |
| CAI7988775.1 | SAD1/UNC-84-LIKE PROTEIN-RELATED |
| CAI7988785.1 | SAD1/UNC-84-LIKE PROTEIN-RELATED |
| CAI7988787.1 | |
| CAI7988789.1 | |
| CAI7988791.1 | PROTEIN ENHANCER OF SEVENLESS 2B |
| CAI7988799.1 | |
| CAI7988803.1 | ZINC FINGER PROTEIN ZPR1 |
| CAI7988801.1 | ZINC FINGER PROTEIN ZPR1 |
| CAI7988807.1 | ZINC FINGER PROTEIN ZPR1 |
| CAI7988805.1 | ZINC FINGER PROTEIN ZPR1 |
| CAI7988811.1 | |
| CAI7988809.1 | |
| CAI7988813.1 | |
| CAI7988815.1 | |
| CAI7988826.1 | |
| CAI7988831.1 | |
| CAI7988829.1 | |
| CAI7988824.1 | |
| CAI7988822.1 | |
| CAI7988819.1 | |
| CAI7988834.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI7988837.1 | |
| CAI7988839.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI7988863.1 | ENOYL-COA HYDRATASE |
| CAI7988861.1 | ENOYL-COA HYDRATASE |
| CAI7988865.1 | 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED |
| CAI7988867.1 | ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC |
| CAI7988869.1 | UVRABC SYSTEM PROTEIN A |
| CAI7988871.1 | UVRABC SYSTEM PROTEIN A |
| CAI7988873.1 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| CAI7988875.1 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| CAI7988877.1 | PEPTIDE METHIONINE SULFOXIDE REDUCTASE |
| CAI7988879.1 | TMRNA-BINDING COMPONENT OF TRANS-TRANSLATION TAGGING COMPLEX |
| CAI7988881.1 | CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE |
| CAI7988889.1 | 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
| CAI7988887.1 | 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
| CAI7988885.1 | 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
| CAI7988883.1 | 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
| CAI7988891.1 | GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC |
| CAI7988893.1 | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE |
| CAI7988895.1 | CELL DIVISION PROTEIN FTSZ-RELATED |
