Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7989114.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI7989116.1 | |
| CAI7989117.1 | RNA M5U METHYLTRANSFERASE |
| CAI7989118.1 | |
| CAI7989119.1 | SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC |
| CAI7989120.1 | SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC |
| CAI7989121.1 | SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA |
| CAI7989122.1 | DISULFIDE OXIDOREDUCTASE |
| CAI7989123.1 | |
| CAI7989124.1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
| CAI7989125.1 | FLAVIN-DEPENDENT THYMIDYLATE SYNTHASE |
| CAI7989126.1 | METHYLMALONYL-COA EPIMERASE |
| CAI7989127.1 | RNA POLYMERASE ECF-TYPE SIGMA FACTO |
| CAI7989128.1 | |
| CAI7989129.1 | ACETATE--COA LIGASE [ADP-FORMING] |
| CAI7989130.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI7989131.1 | SUA5 |
| CAI7989132.1 | GERANYLGERANYL PYROPHOSPHATE SYNTHASE |
| CAI7989133.1 | PHOSPHOGLYCERATE KINASE |
| CAI7989134.1 | COFACTOR-INDEPENDENT PHOSPHOGLYCERATE MUTASE |
| CAI7989135.1 | TRIOSEPHOSPHATE ISOMERASE |
| CAI7989136.1 | TRNA DIMETHYLALLYLTRANSFERASE |
| CAI7989137.1 | GTP-BINDING PROTEIN HFLX |
| CAI7989138.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) |
| CAI7989142.1 | CYTOKINE RECEPTOR |
| CAI7989143.1 | CYTOKINE RECEPTOR |
| CAI7989141.1 | CYTOKINE RECEPTOR |
| CAI7989144.1 | CYTOKINE RECEPTOR |
| CAI7989140.1 | CYTOKINE RECEPTOR |
| CAI7989139.1 | CYTOKINE RECEPTOR |
| CAI7989145.1 | |
| CAI7989146.1 | |
| CAI7989148.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI7989147.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI7989150.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI7989149.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI7989151.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI7989165.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI7989156.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI7989163.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI7989157.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI7989158.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI7989153.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI7989161.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI7989155.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI7989159.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI7989154.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI7989152.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI7989167.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI7989174.1 | ACETYLTRANSFERASE |
