Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7990603.1 | WD40 REPEAT PROTEIN |
| CAI7990601.1 | WD40 REPEAT PROTEIN |
| CAI7990623.1 | WD REPEAT-CONTAINING PROTEIN POP1 |
| CAI7990625.1 | WD40 REPEAT PROTEIN |
| CAI7990627.1 | |
| CAI7990637.1 | PROLINE OXIDASE |
| CAI7990635.1 | PROLINE OXIDASE |
| CAI7990633.1 | PROLINE OXIDASE |
| CAI7990631.1 | PROLINE OXIDASE |
| CAI7990639.1 | PROLINE OXIDASE |
| CAI7990641.1 | - |
| CAI7990650.1 | ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE |
| CAI7990652.1 | JBTS17 |
| CAI7990654.1 | |
| CAI7990656.1 | |
| CAI7990658.1 | PROTEIN SIDEKICK |
| CAI7990664.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI7990666.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI7990662.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI7990660.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI7990668.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI7990674.1 | SREK1IP1 FAMILY MEMBER |
| CAI7990672.1 | SREK1IP1 FAMILY MEMBER |
| CAI7990670.1 | SREK1IP1 FAMILY MEMBER |
| CAI7990676.1 | SREK1IP1 FAMILY MEMBER |
| CAI7990678.1 | |
| CAI7990680.1 | |
| CAI7990682.1 | |
| CAI7990684.1 | |
| CAI7990695.1 | G PROTEIN-COUPLED RECEPTOR-RELATED |
| CAI7990693.1 | G PROTEIN-COUPLED RECEPTOR-RELATED |
| CAI7990699.1 | G PROTEIN-COUPLED RECEPTOR-RELATED |
| CAI7990697.1 | G PROTEIN-COUPLED RECEPTOR-RELATED |
| CAI7990701.1 | G PROTEIN-COUPLED RECEPTOR-RELATED |
| CAI7990703.1 | G PROTEIN-COUPLED RECEPTOR-RELATED |
| CAI7990691.1 | |
| CAI7990705.1 | |
| CAI7990707.1 | |
| CAI7990712.1 | ANNEXIN |
| CAI7990710.1 | ANNEXIN |
| CAI7990714.1 | |
| CAI7990716.1 | |
| CAI7990718.1 | |
| CAI7990720.1 | |
| CAI7990722.1 | |
| CAI7990724.1 | |
| CAI7990728.1 | TIS1421-TRANSPOSASE PROTEIN A |
| CAI7990730.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI7990732.1 | ENDORIBONUCLEASE-RELATED |
| CAI7990734.1 | ZINC PHOSPHODIESTERASE ELAC PROTEIN 1 |
