Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7990736.1 | OXALOACETATE DECARBOXYLASE ALPHA CHAIN |
| CAI7990738.1 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE |
| CAI7990742.1 | ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED |
| CAI7990740.1 | ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED |
| CAI7990744.1 | CARBOXYMETHYLENEBUTENOLIDASE-RELATED |
| CAI7990746.1 | H2HPP ISOMERASE |
| CAI7990752.1 | |
| CAI7990758.1 | |
| CAI7990760.1 | |
| CAI7990756.1 | |
| CAI7990762.1 | |
| CAI7990764.1 | CYTOKINE RECEPTOR |
| CAI7990766.1 | CYTOKINE RECEPTOR |
| CAI7990768.1 | |
| CAI7990754.1 | |
| CAI7990780.1 | ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN |
| CAI7990782.1 | |
| CAI7990784.1 | |
| CAI7990786.1 | |
| CAI7990790.1 | - |
| CAI7990794.1 | - |
| CAI7990792.1 | - |
| CAI7990788.1 | - |
| CAI7990796.1 | - |
| CAI7990798.1 | |
| CAI7990800.1 | BONUS, ISOFORM C-RELATED |
| CAI7990802.1 | G PROTEIN-COUPLED RECEPTOR-RELATED |
| CAI7990804.1 | |
| CAI7990806.1 | |
| CAI7990810.1 | SYNTROPHIN |
| CAI7990808.1 | SYNTROPHIN |
| CAI7990812.1 | |
| CAI7990814.1 | SYNTROPHIN |
| CAI7990820.1 | ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN |
| CAI7990818.1 | ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN |
| CAI7990816.1 | ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN |
| CAI7990822.1 | ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN |
| CAI7990826.1 | |
| CAI7990824.1 | |
| CAI7990828.1 | SI:CH211-161H7.5-RELATED |
| CAI7990830.1 | |
| CAI7990832.1 | |
| CAI7990834.1 | |
| CAI7990836.1 | |
| CAI7990843.1 | |
| CAI7990845.1 | ZINC UPTAKE REGULATION PROTEIN |
| CAI7990847.1 | TREHALOSE-6-PHOSPHATE SYNTHASE |
| CAI7990849.1 | |
| CAI7990851.1 | NADH-QUINONE OXIDOREDUCTASE, E SUBUNIT |
| CAI7990853.1 | NADH-QUINONE OXIDOREDUCTASE SUBUNIT F |
