Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7991030.1 | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER |
| CAI7991032.1 | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER |
| CAI7991036.1 | |
| CAI7991034.1 | |
| CAI7991044.1 | DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED |
| CAI7991040.1 | DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED |
| CAI7991038.1 | DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED |
| CAI7991042.1 | DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED |
| CAI7991046.1 | DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED |
| CAI7991048.1 | NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN-RELATED |
| CAI7991056.1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
| CAI7991052.1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
| CAI7991050.1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
| CAI7991054.1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
| CAI7991060.1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
| CAI7991058.1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
| CAI7991062.1 | |
| CAI7991064.1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
| CAI7991066.1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
| CAI7991068.1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
| CAI7991070.1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
| CAI7991072.1 | |
| CAI7991076.1 | NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 |
| CAI7991078.1 | |
| CAI7991080.1 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| CAI7991085.1 | 5-OXOPROLINASE RELATED |
| CAI7991083.1 | 5-OXOPROLINASE RELATED |
| CAI7991087.1 | |
| CAI7991094.1 | |
| CAI7991102.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER |
| CAI7991100.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER |
| CAI7991098.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER |
| CAI7991096.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER |
| CAI7991104.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER |
| CAI7991106.1 | |
| CAI7991108.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI7991114.1 | |
| CAI7991112.1 | |
| CAI7991110.1 | |
| CAI7991116.1 | |
| CAI7991118.1 | |
| CAI7991126.1 | |
| CAI7991128.1 | |
| CAI7991140.1 | LD33804P |
| CAI7991134.1 | |
| CAI7991138.1 | LD33804P |
| CAI7991132.1 | |
| CAI7991130.1 | |
| CAI7991136.1 | KELCH PROTEIN |
| CAI7991142.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
