Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7991265.1 | 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
| CAI7991267.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI7991269.1 | ACYL-COA DEHYDROGENASE |
| CAI7991271.1 | - |
| CAI7991273.1 | - |
| CAI7991275.1 | |
| CAI7991277.1 | ALCOHOL DEHYDROGENASE |
| CAI7991279.1 | ALCOHOL DEHYDROGENASE |
| CAI7991281.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI7991283.1 | PHOSPHOTRIESTERASE-RELATED |
| CAI7991285.1 | |
| CAI7991289.1 | ACYL-COA SYNTHETASE |
| CAI7991287.1 | ACYL-COA SYNTHETASE |
| CAI7991291.1 | ACYL-COA SYNTHETASE |
| CAI7991293.1 | - |
| CAI7991295.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI7991297.1 | P450, PUTATIVE (EUROFUNG)-RELATED |
| CAI7991299.1 | REGULATOR OF RPOS |
| CAI7991301.1 | SUGAR FERMENTATION STIMULATION PROTEIN A |
| CAI7991303.1 | A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III |
| CAI7991305.1 | |
| CAI7991307.1 | MONOACYLGLYCEROL LIPASE |
| CAI7991309.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI7991311.1 | UNCHARACTERIZED |
| CAI7991313.1 | |
| CAI7991315.1 | PHP DOMAIN PROTEIN |
| CAI7991317.1 | |
| CAI7991321.1 | EXOSOME COMPLEX COMPONENT |
| CAI7991319.1 | EXOSOME COMPLEX COMPONENT |
| CAI7991323.1 | NUCLEOTIDYL TRANSFERASE |
| CAI7991325.1 | NUCLEOTIDYL TRANSFERASE |
| CAI7991327.1 | |
| CAI7991329.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI7991333.1 | |
| CAI7991335.1 | |
| CAI7991346.1 | BONUS, ISOFORM C-RELATED |
| CAI7991344.1 | BONUS, ISOFORM C-RELATED |
| CAI7991342.1 | BONUS, ISOFORM C-RELATED |
| CAI7991340.1 | BONUS, ISOFORM C-RELATED |
| CAI7991348.1 | SPRY DOMAIN CONTAINING SOCS BOX PROTEIN |
| CAI7991351.1 | |
| CAI7991376.1 | OCTANOYLTRANSFERASE |
| CAI7991374.1 | OCTANOYLTRANSFERASE |
| CAI7991384.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI7991382.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI7991380.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI7991378.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI7991387.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI7991389.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL |
| CAI7991391.1 |
