Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7991547.1 | BETA-1,4-GALACTOSYLTRANSFERASE |
| CAI7991545.1 | BETA-1,4-GALACTOSYLTRANSFERASE |
| CAI7991549.1 | |
| CAI7991553.1 | NARDILYSIN |
| CAI7991551.1 | NARDILYSIN |
| CAI7991555.1 | NARDILYSIN |
| CAI7991557.1 | NARDILYSIN |
| CAI7991564.1 | |
| CAI7991562.1 | |
| CAI7991560.1 | |
| CAI7991566.1 | |
| CAI7991572.1 | |
| CAI7991574.1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| CAI7991576.1 | |
| CAI7991578.1 | |
| CAI7991580.1 | CXC2 DOMAIN-CONTAINING PROTEIN |
| CAI7991586.1 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
| CAI7991584.1 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
| CAI7991582.1 | |
| CAI7991588.1 | |
| CAI7991590.1 | |
| CAI7991593.1 | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 |
| CAI7991595.1 | |
| CAI7991597.1 | BAX INHIBITOR-RELATED |
| CAI7991599.1 | BAX INHIBITOR-RELATED |
| CAI7991601.1 | BAX INHIBITOR-RELATED |
| CAI7991603.1 | BAX INHIBITOR-RELATED |
| CAI7991612.1 | TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN |
| CAI7991614.1 | |
| CAI7991616.1 | |
| CAI7991618.1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| CAI7991620.1 | SPLICING FACTOR 45 SPF45 |
| CAI7991622.1 | |
| CAI7991634.1 | RNA CLEAVAGE STIMULATION FACTOR |
| CAI7991632.1 | RNA CLEAVAGE STIMULATION FACTOR |
| CAI7991636.1 | RNA CLEAVAGE STIMULATION FACTOR |
| CAI7991638.1 | RNA CLEAVAGE STIMULATION FACTOR |
| CAI7991630.1 | RNA CLEAVAGE STIMULATION FACTOR |
| CAI7991628.1 | RNA CLEAVAGE STIMULATION FACTOR |
| CAI7991626.1 | RNA CLEAVAGE STIMULATION FACTOR |
| CAI7991624.1 | RNA CLEAVAGE STIMULATION FACTOR |
| CAI7991640.1 | PROTEIN CBG20488 |
| CAI7991642.1 | |
| CAI7991644.1 | |
| CAI7991666.1 | REGUCALCIN |
| CAI7991668.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI7991672.1 | |
| CAI7991674.1 | |
| CAI7991670.1 | |
| CAI7991676.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
