About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50%31,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI7991678.1PEPTIDE CHAIN RELEASE FACTOR 2
CAI7991680.1BINDING PROTEIN TRANSPEPTIDASE, PUTATIVE-RELATED
CAI7991682.1N-ACETYLMURAMOYL-L-ALANINE AMIDASE
CAI7991684.1ADDUCIN
CAI7991686.1D-LACTATE DEHYDROGENASE
CAI7991688.1D-LACTATE DEHYDROGENASE
CAI7991690.1D-LACTATE DEHYDROGENASE
CAI7991692.1SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER
CAI7991694.1SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER
CAI7991696.1PYRUVATE KINASE
CAI7991698.1
CAI7991700.1MALTODEXTRIN IMPORT ATP-BINDING PROTEIN MSMX
CAI7991702.1
CAI7991704.15-OXOPROLINASE RELATED
CAI7991706.1
CAI7991708.1
CAI7991710.1MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE F
CAI7991712.1AMINO ACID IMPORT ATP-BINDING PROTEIN
CAI7991714.1GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM ATP-BINDING PROTEIN PROV
CAI7991722.1GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM ATP-BINDING PROTEIN PROV
CAI7991720.1AMINO ACID IMPORT ATP-BINDING PROTEIN
CAI7991716.1AMINO ACID IMPORT ATP-BINDING PROTEIN
CAI7991718.1AMINO ACID IMPORT ATP-BINDING PROTEIN
CAI7991724.1GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM ATP-BINDING PROTEIN PROV
CAI7991726.1GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM ATP-BINDING PROTEIN PROV
CAI7991728.1GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM ATP-BINDING PROTEIN PROV
CAI7991730.1HYDROXYMETHYLGLUTARYL-COA LYASE
CAI7991732.1
CAI7991734.139S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL
CAI7991736.1METALLOPROTEASE TLDD
CAI7991738.1
CAI7991740.1ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED
CAI7991742.1ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED
CAI7991744.1ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED
CAI7991746.1ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED
CAI7991748.1ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED
CAI7991750.1ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED
CAI7991752.1ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED
CAI7991754.1ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED
CAI7991756.1ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED
CAI7991758.1SARCOSINE DEHYDROGENASE-RELATED
CAI7991760.1AMINOMETHYLTRANSFERASE
CAI7991762.1QUINONE OXIDOREDUCTASE PIG3-RELATED
CAI7991764.1ALANINE DEHYDROGENASE
CAI7991767.1MALONATE-SEMIALDEHYDE DEHYDROGENASE
CAI7991769.1NITRILASE C965.09-RELATED
CAI7991771.1NITRILASE C965.09-RELATED
CAI7991773.1MALTOSE TRANSPORT SYSTEM PERMEASE-RELATED
CAI7991775.1TRANSAMIDASE
CAI7991777.1
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