Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7991779.1 | ALLANTOATE DEIMINASE-RELATED |
| CAI7991781.1 | NITRILASE C965.09-RELATED |
| CAI7991783.1 | ROK (REPRESSOR, ORF, KINASE) FAMILY |
| CAI7991785.1 | N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE |
| CAI7991787.1 | TRANS-3-HYDROXY-L-PROLINE DEHYDRATASE |
| CAI7991789.1 | TRANS-3-HYDROXY-L-PROLINE DEHYDRATASE |
| CAI7991791.1 | 4-CARBOXYMUCONOLACTONE DECARBOXYLASE FAMILY PROTEIN |
| CAI7991793.1 | |
| CAI7991795.1 | ISOMERASE |
| CAI7991797.1 | RUBREDOXIN |
| CAI7991799.1 | |
| CAI7991803.1 | DNA REPAIR PROTEIN RECN |
| CAI7991805.1 | DNA REPAIR PROTEIN RECN |
| CAI7991815.1 | DILUTE DOMAIN-CONTAINING PROTEIN YPR089W |
| CAI7991817.1 | DILUTE DOMAIN-CONTAINING PROTEIN YPR089W |
| CAI7991819.1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
| CAI7991821.1 | |
| CAI7991823.1 | |
| CAI7991829.1 | ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER |
| CAI7991831.1 | ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER |
| CAI7991827.1 | ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER |
| CAI7991825.1 | ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER |
| CAI7991833.1 | ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER |
| CAI7991835.1 | ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER |
| CAI7991837.1 | ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER |
| CAI7991839.1 | ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER |
| CAI7991841.1 | ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER |
| CAI7991843.1 | ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER |
| CAI7991845.1 | ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER |
| CAI7991847.1 | |
| CAI7991849.1 | |
| CAI7991853.1 | ACETYLGLUCOSAMINYLTRANSFERASE |
| CAI7991867.1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
| CAI7991869.1 | AMYLOID BETA A4 PRECURSOR PROTEIN-BINDING FAMILY B |
| CAI7991871.1 | STEROL DESATURASE |
| CAI7991873.1 | RAB FAMILY |
| CAI7991883.1 | SERINE/THREONINE-PROTEIN KINASE PLK |
| CAI7991881.1 | SERINE/THREONINE-PROTEIN KINASE PLK |
| CAI7991879.1 | SERINE/THREONINE-PROTEIN KINASE PLK |
| CAI7991877.1 | SERINE/THREONINE-PROTEIN KINASE PLK |
| CAI7991875.1 | SERINE/THREONINE-PROTEIN KINASE PLK |
| CAI7991885.1 | FI01459P |
| CAI7991887.1 | - |
| CAI7991889.1 | |
| CAI7991891.1 | |
| CAI7991899.1 | ZINC FINGER MATRIN-TYPE PROTEIN 2 |
| CAI7991897.1 | ZINC FINGER MATRIN-TYPE PROTEIN 2 |
| CAI7991895.1 | ZINC FINGER MATRIN-TYPE PROTEIN 2 |
| CAI7991893.1 | ZINC FINGER MATRIN-TYPE PROTEIN 2 |
| CAI7991901.1 | ZINC FINGER MATRIN-TYPE PROTEIN 2 |
