Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7992067.1 | DENN DOMAIN-CONTAINING PROTEIN 4 |
| CAI7992066.1 | |
| CAI7992069.1 | OS05G0310600 PROTEIN |
| CAI7992068.1 | DENN DOMAIN-CONTAINING PROTEIN 4 |
| CAI7992070.1 | 40S RIBOSOMAL PROTEIN S6 |
| CAI7992074.1 | LEUCINE RICH REPEAT PROTEIN |
| CAI7992072.1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
| CAI7992076.1 | RAG1-ACTIVATING PROTEIN 1 |
| CAI7992078.1 | |
| CAI7992080.1 | ADP-DEPENDENT GLUCOKINASE |
| CAI7992082.1 | ADP-DEPENDENT GLUCOKINASE |
| CAI7992088.1 | |
| CAI7992090.1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| CAI7992086.1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| CAI7992084.1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| CAI7992092.1 | |
| CAI7992094.1 | |
| CAI7992096.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI7992100.1 | TRANSCRIPTIONAL ADAPTER 3-RELATED |
| CAI7992102.1 | TRANSCRIPTIONAL ADAPTER 3-RELATED |
| CAI7992098.1 | TRANSCRIPTIONAL ADAPTER 3-RELATED |
| CAI7992104.1 | TRANSCRIPTIONAL ADAPTER 3-RELATED |
| CAI7992106.1 | TRANSCRIPTIONAL ADAPTER 3-RELATED |
| CAI7992108.1 | ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 1 |
| CAI7992116.1 | RIBONUCLEASE |
| CAI7992118.1 | RIBONUCLEASE |
| CAI7992112.1 | RIBONUCLEASE |
| CAI7992110.1 | RIBONUCLEASE |
| CAI7992114.1 | RIBONUCLEASE |
| CAI7992120.1 | STEROL REGULATORY ELEMENT-BINDING PROTEIN CLEAVAGE-ACTIVATING PROTEIN |
| CAI7992122.1 | STEROL REGULATORY ELEMENT-BINDING PROTEIN CLEAVAGE-ACTIVATING PROTEIN |
| CAI7992124.1 | STEROL REGULATORY ELEMENT-BINDING PROTEIN CLEAVAGE-ACTIVATING PROTEIN |
| CAI7992130.1 | SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP |
| CAI7992126.1 | SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP |
| CAI7992128.1 | SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP |
| CAI7992138.1 | |
| CAI7992140.1 | |
| CAI7992142.1 | |
| CAI7992144.1 | |
| CAI7992150.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI7992148.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI7992146.1 | |
| CAI7992152.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI7992154.1 | |
| CAI7992160.1 | LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN |
| CAI7992158.1 | LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN |
| CAI7992164.1 | |
| CAI7992162.1 | |
| CAI7992166.1 | |
| CAI7992156.1 | DYNACTIN P62 SUBUNIT |
