Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7992417.1 | GEO12009P1 |
| CAI7992415.1 | GEO12009P1 |
| CAI7992421.1 | OXIDOREDUCTASE WITH IRON-SULFUR SUBUNIT |
| CAI7992423.1 | XANTHINE DEHYDROGENASE |
| CAI7992425.1 | XANTHINE DEHYDROGENASE SUBUNIT C-RELATED |
| CAI7992427.1 | METHYLTRANSFERASE, FKBM FAMILY PROTEIN |
| CAI7992429.1 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED |
| CAI7992433.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI7992431.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI7992435.1 | |
| CAI7992437.1 | |
| CAI7992439.1 | |
| CAI7992441.1 | |
| CAI7992443.1 | HYDROXYPYRUVATE ISOMERASE |
| CAI7992445.1 | BCDNA.GH03377 |
| CAI7992447.1 | SECRETED GLYCOSYL HYDROLASE |
| CAI7992449.1 | IRON-SULFUR PROTEIN NUBPL |
| CAI7992451.1 | IRON-SULFUR PROTEIN NUBPL |
| CAI7992453.1 | L-SERYL-TRNA(SEC) SELENIUM TRANSFERASE |
| CAI7992455.1 | BILIVERDIN REDUCTASE A |
| CAI7992457.1 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED |
| CAI7992459.1 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED |
| CAI7992461.1 | EFFLUX SYSTEM COMPONENT YKNX-RELATED |
| CAI7992463.1 | OXIDOREDUCTASE, SHORT CHAIN DEHYDROGENASE/REDUCTASE FAMILY (AFU_ORTHOLOGUE AFUA_5G14000) |
| CAI7992465.1 | PBS LYASE HEAT-LIKE PROTEIN |
| CAI7992467.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI7992469.1 | |
| CAI7992471.1 | 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE |
| CAI7992473.1 | OOKINETE PROTEIN, PUTATIVE-RELATED |
| CAI7992475.1 | |
| CAI7992479.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI7992481.1 | BONUS, ISOFORM C-RELATED |
| CAI7992483.1 | |
| CAI7992485.1 | CHARGED MULTIVESICULAR BODY PROTEIN |
| CAI7992497.1 | ADENYLOSUCCINATE SYNTHETASE |
| CAI7992499.1 | UNCHARACTERIZED PROTEIN YVCK-RELATED |
| CAI7992501.1 | |
| CAI7992505.1 | DIHYDRODIPICOLINATE SYNTHASE |
| CAI7992503.1 | DIHYDRODIPICOLINATE SYNTHASE |
| CAI7992509.1 | DEHYDROGENASE, PUTATIVE-RELATED |
| CAI7992507.1 | DEHYDROGENASE, PUTATIVE-RELATED |
| CAI7992511.1 | DIHYDRODIPICOLINATE REDUCTASE |
| CAI7992513.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI7992515.1 | COLLAGEN ALPHA |
| CAI7992517.1 | NUCLEOTIDYL TRANSFERASE |
| CAI7992519.1 | SPORULATION PROTEIN RELATED |
| CAI7992521.1 | RIBONUCLEASE J |
| CAI7992523.1 | RIBONUCLEASE J |
| CAI7992527.1 | TYPE-5 URACIL-DNA GLYCOSYLASE |
| CAI7992525.1 | TYPE-5 URACIL-DNA GLYCOSYLASE |
