Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7992640.1 | |
| CAI7992638.1 | |
| CAI7992648.1 | |
| CAI7992650.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI7992654.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI7992652.1 | |
| CAI7992656.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI7992659.1 | |
| CAI7992661.1 | |
| CAI7992663.1 | |
| CAI7992673.1 | RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN |
| CAI7992675.1 | RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN |
| CAI7992677.1 | RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEIN |
| CAI7992671.1 | - |
| CAI7992679.1 | RAS-RELATED PROTEIN RAB |
| CAI7992683.1 | RUS1 FAMILY PROTEIN C16ORF58 |
| CAI7992682.1 | RUS1 FAMILY PROTEIN C16ORF58 |
| CAI7992680.1 | RAB FAMILY |
| CAI7992681.1 | |
| CAI7992684.1 | DRAB11-RELATED |
| CAI7992685.1 | CHONDROITIN SYNTHASE |
| CAI7992686.1 | |
| CAI7992687.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER |
| CAI7992689.1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| CAI7992690.1 | |
| CAI7992688.1 | |
| CAI7992691.1 | COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17 |
| CAI7992692.1 | SUGAR TRANSPORTER |
| CAI7992693.1 | |
| CAI7992694.1 | EPITHELIAL MEMBRANE PROTEIN-RELATED |
| CAI7992695.1 | UNCHARACTERIZED |
| CAI7992696.1 | IGGFC_BINDING DOMAIN-CONTAINING PROTEIN |
| CAI7992697.1 | |
| CAI7992698.1 | |
| CAI7992699.1 | |
| CAI7992700.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI7992706.1 | THYMIDYLATE SYNTHASE 1 |
| CAI7992705.1 | THYMIDYLATE SYNTHASE 1 |
| CAI7992704.1 | THYMIDYLATE SYNTHASE 1 |
| CAI7992702.1 | THYMIDYLATE SYNTHASE 1 |
| CAI7992701.1 | THYMIDYLATE SYNTHASE 1 |
| CAI7992703.1 | THYMIDYLATE SYNTHASE 1 |
| CAI7992707.1 | |
| CAI7992708.1 | |
| CAI7992709.1 | |
| CAI7992710.1 | |
| CAI7992711.1 | |
| CAI7992712.1 | |
| CAI7992713.1 | |
| CAI7992714.1 |
