Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7992801.1 | AP-5 COMPLEX SUBUNIT ZETA-1 |
| CAI7992799.1 | |
| CAI7992811.1 | AP-5 COMPLEX SUBUNIT ZETA-1 |
| CAI7992814.1 | AP-5 COMPLEX SUBUNIT ZETA-1 |
| CAI7992816.1 | 30S 40S RIBOSOMAL PROTEIN |
| CAI7992818.1 | THO COMPLEX SUBUNIT 1 |
| CAI7992820.1 | PROTEIN BUD31-RELATED |
| CAI7992823.1 | |
| CAI7992825.1 | |
| CAI7992841.1 | SORTING NEXIN |
| CAI7992839.1 | SORTING NEXIN |
| CAI7992837.1 | SORTING NEXIN |
| CAI7992835.1 | SORTING NEXIN |
| CAI7992833.1 | SORTING NEXIN |
| CAI7992843.1 | |
| CAI7992845.1 | |
| CAI7992847.1 | |
| CAI7992849.1 | CHAPERONIN |
| CAI7992851.1 | CHAPERONIN |
| CAI7992855.1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
| CAI7992859.1 | UNCHARACTERIZED |
| CAI7992853.1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
| CAI7992857.1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
| CAI7992861.1 | UNCHARACTERIZED |
| CAI7992865.1 | TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS |
| CAI7992863.1 | TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS |
| CAI7992867.1 | |
| CAI7992883.1 | HL01030P-RELATED |
| CAI7992879.1 | |
| CAI7992881.1 | |
| CAI7992877.1 | |
| CAI7992885.1 | HL01030P-RELATED |
| CAI7992887.1 | HL01030P-RELATED |
| CAI7992889.1 | |
| CAI7992891.1 | DNA INTERNALIZATION/COMPETENCE PROTEIN COMEC/REC2 |
| CAI7992893.1 | |
| CAI7992895.1 | |
| CAI7992897.1 | |
| CAI7992903.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI7992905.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI7992907.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI7992901.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI7992899.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI7992911.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI7992909.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI7992913.1 | |
| CAI7992915.1 | |
| CAI7992917.1 | INNER MEMBRANE PROTEIN YEDE |
| CAI7992919.1 | INNER MEMBRANE PROTEIN YEDE |
| CAI7992921.1 | INNER MEMBRANE PROTEIN YEDE |
