Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7993169.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI7993171.1 | SSL7038 PROTEIN |
| CAI7993173.1 | SSL7039 PROTEIN |
| CAI7993175.1 | ENOLASE SUPERFAMILY, MANDELATE RACEMASE |
| CAI7993177.1 | |
| CAI7993179.1 | POTASSIUM CHANNEL PROTEIN 2-RELATED-RELATED |
| CAI7993181.1 | ENOLASE SUPERFAMILY, MANDELATE RACEMASE |
| CAI7993183.1 | RIBOSOMAL PROTEIN L25/GLN-TRNA SYNTHETASE, ANTI-CODON-BINDING DOMAIN-CONTAINING PROTEIN |
| CAI7993187.1 | RIBONUCLEASE H1 |
| CAI7993185.1 | RIBONUCLEASE H1 |
| CAI7993193.1 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
| CAI7993191.1 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
| CAI7993189.1 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
| CAI7993195.1 | FRUCTOSE-BISPHOSPHATE ALDOLASE |
| CAI7993197.1 | ARSENITE METHYLTRANSFERASE |
| CAI7993199.1 | |
| CAI7993201.1 | PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE |
| CAI7993203.1 | LYSYL-TRNA SYNTHETASE |
| CAI7993205.1 | |
| CAI7993207.1 | |
| CAI7993209.1 | N-ACYLNEURAMINATE-9-PHOSPHATASE |
| CAI7993211.1 | NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE-RELATED |
| CAI7993213.1 | DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED |
| CAI7993215.1 | DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED |
| CAI7993219.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI7993221.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI7993223.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI7993230.1 | |
| CAI7993232.1 | LAR INTERACTING PROTEIN LIP -RELATED PROTEIN |
| CAI7993234.1 | LAR INTERACTING PROTEIN LIP -RELATED PROTEIN |
| CAI7993236.1 | LAR INTERACTING PROTEIN LIP -RELATED PROTEIN |
| CAI7993237.1 | |
| CAI7993238.1 | LAR INTERACTING PROTEIN LIP -RELATED PROTEIN |
| CAI7993239.1 | LAR INTERACTING PROTEIN LIP -RELATED PROTEIN |
| CAI7993240.1 | |
| CAI7993241.1 | |
| CAI7993242.1 | |
| CAI7993243.1 | TELOMERASE REVERSE TRANSCRIPTASE |
| CAI7993244.1 | TELOMERASE REVERSE TRANSCRIPTASE |
| CAI7993247.1 | TELOMERASE REVERSE TRANSCRIPTASE |
| CAI7993245.1 | TELOMERASE REVERSE TRANSCRIPTASE |
| CAI7993246.1 | TELOMERASE REVERSE TRANSCRIPTASE |
| CAI7993248.1 | |
| CAI7993249.1 | |
| CAI7993250.1 | SORTING NEXIN-4 |
| CAI7993251.1 | SORTING NEXIN |
| CAI7993252.1 | CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX19 |
| CAI7993253.1 | |
| CAI7993255.1 | |
| CAI7993254.1 |
