Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7993485.1 | HEAT SHOCK FACTOR BINDING PROTEIN 1 |
| CAI7993488.1 | E3 UBIQUITIN-PROTEIN LIGASE RNF8 |
| CAI7993490.1 | |
| CAI7993492.1 | PHOSPHOLIPASE B, PLB1 |
| CAI7993494.1 | CDC68 RELATED |
| CAI7993496.1 | CDC68 RELATED |
| CAI7993502.1 | MUCOLIPIN |
| CAI7993500.1 | MUCOLIPIN |
| CAI7993498.1 | MUCOLIPIN |
| CAI7993504.1 | MUCOLIPIN |
| CAI7993506.1 | PROKARYOTIC DNA TOPOISOMERASE |
| CAI7993510.1 | PROKARYOTIC DNA TOPOISOMERASE |
| CAI7993508.1 | PROKARYOTIC DNA TOPOISOMERASE |
| CAI7993512.1 | PROKARYOTIC DNA TOPOISOMERASE |
| CAI7993514.1 | PROKARYOTIC DNA TOPOISOMERASE |
| CAI7993516.1 | PROKARYOTIC DNA TOPOISOMERASE |
| CAI7993518.1 | SYS1 |
| CAI7993520.1 | SYS1 |
| CAI7993524.1 | RING FINGER PROTEIN 31-RELATED |
| CAI7993522.1 | RING FINGER PROTEIN 31-RELATED |
| CAI7993526.1 | RING FINGER PROTEIN 31-RELATED |
| CAI7993528.1 | RING FINGER PROTEIN 31-RELATED |
| CAI7993530.1 | FORKHEAD BOX PROTEIN |
| CAI7993532.1 | GDP-MANNOSE 4,6-DEHYDRATASE |
| CAI7993534.1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATED |
| CAI7993543.1 | IMPORTIN BETA |
| CAI7993549.1 | IMPORTIN BETA |
| CAI7993547.1 | IMPORTIN BETA |
| CAI7993541.1 | IMPORTIN BETA |
| CAI7993545.1 | IMPORTIN BETA |
| CAI7993539.1 | IMPORTIN BETA |
| CAI7993536.1 | IMPORTIN BETA |
| CAI7993553.1 | TRANSMEMBRANE PROTEIN 208 |
| CAI7993551.1 | TRANSMEMBRANE PROTEIN 208 |
| CAI7993555.1 | 40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI |
| CAI7993557.1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
| CAI7993559.1 | |
| CAI7993563.1 | DYNEIN REGULATORY COMPLEX SUBUNIT 4 |
| CAI7993561.1 | DYNEIN REGULATORY COMPLEX SUBUNIT 4 |
| CAI7993565.1 | DYNEIN REGULATORY COMPLEX SUBUNIT 4 |
| CAI7993567.1 | DYNEIN REGULATORY COMPLEX SUBUNIT 4 |
| CAI7993569.1 | |
| CAI7993573.1 | MRNA GUANINE-7- METHYLTRANSFERASE |
| CAI7993577.1 | MRNA GUANINE-7- METHYLTRANSFERASE |
| CAI7993579.1 | MRNA GUANINE-7- METHYLTRANSFERASE |
| CAI7993575.1 | MRNA GUANINE-7- METHYLTRANSFERASE |
| CAI7993571.1 | MRNA GUANINE-7- METHYLTRANSFERASE |
| CAI7993581.1 | CADHERIN-23 |
| CAI7993583.1 | CADHERIN-23 |
| CAI7993585.1 | FAT ATYPICAL CADHERIN-RELATED |
