Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7991903.1 | |
| CAI7991905.1 | ZINC FINGER MATRIN-TYPE PROTEIN 2 |
| CAI7991907.1 | |
| CAI7991909.1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
| CAI7991911.1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
| CAI7991919.1 | |
| CAI7991921.1 | PROTEIN SMF |
| CAI7991923.1 | LIPOPROTEIN-RELATED |
| CAI7991925.1 | |
| CAI7991927.1 | REGULATOR OF RPOS |
| CAI7991929.1 | TWO-COMPONENT HISTIDINE KINASE |
| CAI7991931.1 | |
| CAI7991933.1 | 10 KDA HEAT SHOCK PROTEIN |
| CAI7991935.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI7991937.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI7991939.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI7991941.1 | THIAMINE-PHOSPHATE PYROPHOSPHORYLASE |
| CAI7991945.1 | THIAZOLE SYNTHASE |
| CAI7991943.1 | THIAZOLE SYNTHASE |
| CAI7991947.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI7991949.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI7991951.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI7991953.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI7991955.1 | |
| CAI7991957.1 | ENOYL-COA HYDRATASE |
| CAI7991970.1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 20 |
| CAI7991972.1 | NHL REPEAT-CONTAINING PROTEIN 2 |
| CAI7991974.1 | |
| CAI7991980.1 | |
| CAI7991978.1 | |
| CAI7991976.1 | |
| CAI7991982.1 | TMRNA-BINDING COMPONENT OF TRANS-TRANSLATION TAGGING COMPLEX |
| CAI7991986.1 | GTP-BINDING PROTEIN HFLX |
| CAI7991984.1 | GTP-BINDING PROTEIN HFLX |
| CAI7991988.1 | AMINO ACID AMINOTRANSFERASE |
| CAI7991990.1 | DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC |
| CAI7991992.1 | |
| CAI7991994.1 | TRNA DIMETHYLALLYLTRANSFERASE |
| CAI7991996.1 | COFACTOR-INDEPENDENT PHOSPHOGLYCERATE MUTASE |
| CAI7991998.1 | COFACTOR-INDEPENDENT PHOSPHOGLYCERATE MUTASE |
| CAI7992004.1 | PHOSPHOGLYCERATE KINASE |
| CAI7992000.1 | PHOSPHOGLYCERATE KINASE |
| CAI7992002.1 | PHOSPHOGLYCERATE KINASE |
| CAI7992006.1 | |
| CAI7992008.1 | |
| CAI7992010.1 | |
| CAI7992012.1 | SUA5 |
| CAI7992013.1 | GMP SYNTHASE-RELATED |
| CAI7992015.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
| CAI7992014.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
