Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7991457.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7991458.1 | |
| CAI7991459.1 | |
| CAI7991460.1 | |
| CAI7991461.1 | JITTERBUG, ISOFORM N |
| CAI7991463.1 | |
| CAI7991462.1 | |
| CAI7991464.1 | |
| CAI7991465.1 | JITTERBUG, ISOFORM N |
| CAI7991466.1 | |
| CAI7991467.1 | JITTERBUG, ISOFORM N |
| CAI7991468.1 | JITTERBUG, ISOFORM N |
| CAI7991470.1 | 3-5 EXONUCLEASE |
| CAI7991469.1 | |
| CAI7991471.1 | |
| CAI7991472.1 | |
| CAI7991476.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI7991478.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI7991477.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI7991475.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI7991474.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI7991473.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI7991479.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI7991481.1 | |
| CAI7991484.1 | |
| CAI7991486.1 | |
| CAI7991490.1 | |
| CAI7991488.1 | |
| CAI7991501.1 | VACUOLAR CALCIUM ION TRANSPORTER |
| CAI7991499.1 | VACUOLAR CALCIUM ION TRANSPORTER |
| CAI7991497.1 | |
| CAI7991503.1 | VACUOLAR CALCIUM ION TRANSPORTER |
| CAI7991505.1 | VACUOLAR CALCIUM ION TRANSPORTER |
| CAI7991507.1 | |
| CAI7991509.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| CAI7991511.1 | CONNECTOR ENCHANCER OF KINASE SUPPRESSOR OF RAS |
| CAI7991513.1 | CONNECTOR ENCHANCER OF KINASE SUPPRESSOR OF RAS |
| CAI7991515.1 | CONNECTOR ENCHANCER OF KINASE SUPPRESSOR OF RAS |
| CAI7991517.1 | |
| CAI7991521.1 | SRC-ASSOCIATED ADAPTOR PROTEIN |
| CAI7991519.1 | SRC-ASSOCIATED ADAPTOR PROTEIN |
| CAI7991523.1 | |
| CAI7991525.1 | |
| CAI7991533.1 | L-SERYL-TRNA(SEC) KINASE |
| CAI7991531.1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 10 |
| CAI7991537.1 | PHOSPHATIDYLINOSITOL 4-KINASE TYPE-II |
| CAI7991535.1 | PHOSPHATIDYLINOSITOL 4-KINASE TYPE-II |
| CAI7991539.1 | PHOSPHATIDYLINOSITOL 4-KINASE TYPE-II |
| CAI7991541.1 | |
| CAI7991543.1 |
