Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7990954.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7990952.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7990955.1 | |
| CAI7990956.1 | |
| CAI7990957.1 | |
| CAI7990958.1 | MOXR FAMILY PROTEIN |
| CAI7990959.1 | H REPEAT-ASSOCIATED PREDICTED TRANSPOSASE |
| CAI7990960.1 | |
| CAI7990961.1 | |
| CAI7990962.1 | IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL |
| CAI7990963.1 | OXIDOREDUCTASE, SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY (AFU_ORTHOLOGUE AFUA_5G02870) |
| CAI7990964.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI7990966.1 | FATTY ACID/PHOSPHOLIPID SYNTHESIS PROTEIN PLSX |
| CAI7990965.1 | FATTY ACID/PHOSPHOLIPID SYNTHESIS PROTEIN PLSX |
| CAI7990967.1 | |
| CAI7990968.1 | ION_TRANS DOMAIN-CONTAINING PROTEIN |
| CAI7990970.1 | ION_TRANS DOMAIN-CONTAINING PROTEIN |
| CAI7990969.1 | ION_TRANS DOMAIN-CONTAINING PROTEIN |
| CAI7990972.1 | |
| CAI7990971.1 | |
| CAI7990973.1 | |
| CAI7990974.1 | ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD |
| CAI7990978.1 | MICROFIBRIL-ASSOCIATED PROTEIN |
| CAI7990979.1 | MICROFIBRIL-ASSOCIATED PROTEIN |
| CAI7990977.1 | MICROFIBRIL-ASSOCIATED PROTEIN |
| CAI7990976.1 | MICROFIBRIL-ASSOCIATED PROTEIN |
| CAI7990975.1 | MICROFIBRIL-ASSOCIATED PROTEIN |
| CAI7990980.1 | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 |
| CAI7990982.1 | - |
| CAI7990983.1 | - |
| CAI7990981.1 | |
| CAI7990984.1 | - |
| CAI7990985.1 | |
| CAI7990986.1 | AMINO ACID IMPORT ATP-BINDING PROTEIN |
| CAI7990988.1 | |
| CAI7990990.1 | AMINO ACID IMPORT ATP-BINDING PROTEIN |
| CAI7990992.1 | |
| CAI7990994.1 | |
| CAI7990996.1 | |
| CAI7991008.1 | |
| CAI7991020.1 | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER |
| CAI7991016.1 | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER |
| CAI7991018.1 | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER |
| CAI7991014.1 | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER |
| CAI7991012.1 | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER |
| CAI7991010.1 | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER |
| CAI7991022.1 | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER |
| CAI7991026.1 | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER |
| CAI7991024.1 | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER |
| CAI7991028.1 | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER |
