Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7991144.1 | |
| CAI7991146.1 | |
| CAI7991148.1 | |
| CAI7991150.1 | |
| CAI7991158.1 | UDP-N-ACETYLGLUCOSAMINE TRANSFERASE SUBUNIT ALG13 |
| CAI7991160.1 | |
| CAI7991162.1 | |
| CAI7991164.1 | |
| CAI7991166.1 | |
| CAI7991168.1 | |
| CAI7991170.1 | |
| CAI7991172.1 | |
| CAI7991174.1 | |
| CAI7991176.1 | |
| CAI7991178.1 | |
| CAI7991180.1 | |
| CAI7991182.1 | |
| CAI7991184.1 | GUANIDINOACETATE N-METHYLTRANSFERASE |
| CAI7991186.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI7991189.1 | HISTONE DEACETYLASE 2-RELATED |
| CAI7991192.1 | D-MALATE DEHYDROGENASE [DECARBOXYLATING] |
| CAI7991194.1 | |
| CAI7991196.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI7991211.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI7991213.1 | |
| CAI7991215.1 | NADPH NITROREDUCTASE |
| CAI7991217.1 | AMINOHYDROLASE SSNA-RELATED |
| CAI7991219.1 | |
| CAI7991221.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI7991223.1 | SUGAR KINASE |
| CAI7991225.1 | NUDIX HYDROLASE 23 |
| CAI7991227.1 | DNA UTILIZATION PROTEIN YHGH |
| CAI7991229.1 | XYLOGLUCANASE (EUROFUNG) |
| CAI7991231.1 | |
| CAI7991233.1 | HYDROXYMETHYLGLUTARYL-COA LYASE |
| CAI7991235.1 | ARGINASE/AGMATINASE |
| CAI7991237.1 | S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME |
| CAI7991239.1 | MOXR FAMILY PROTEIN |
| CAI7991241.1 | |
| CAI7991243.1 | |
| CAI7991245.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED |
| CAI7991247.1 | IMPORT ATP-BINDING PROTEIN |
| CAI7991249.1 | |
| CAI7991251.1 | 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE |
| CAI7991253.1 | COMPONENT OF ATP-DEPENDENT DSDNA EXONUCLEASE |
| CAI7991255.1 | D-AMINOPEPTIDASE |
| CAI7991257.1 | CONSERVED HYPOTHETICAL ALANINE AND LEUCINE RICH PROTEIN |
| CAI7991259.1 | 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
| CAI7991261.1 | 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
| CAI7991263.1 | 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
